RnoINT0123487 @ rn6
Intron Retention
Gene
ENSRNOG00000016795 | Rabl6
Description
RAB, member RAS oncogene family-like 6 [Source:RGD Symbol;Acc:1307615]
Coordinates
chr3:2807833-2808727:-
Coord C1 exon
chr3:2808556-2808727
Coord A exon
chr3:2807892-2808555
Coord C2 exon
chr3:2807833-2807891
Length
664 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
CAGCTGTCTTTCTTGTGCAGATA
3' ss Score
9.47
Exon sequences
Seq C1 exon
GGCAGGTTCCCAGTAAGAGAAGACCTCTCTGATGTAACTGATGAGGATACTGGCCCTGCTCAGCCACCCCCACCCTCCAAGTTCCCAGTCCCTGCTTTCAGGCTGAAGAATGACTCAGATCTCTTTGGGCTGGGCCTGGAGGAGCTGGGACCCAAGGAAAGCAGTGAGGAAG
Seq A exon
GTAGGAGGGCCTGGGTTTGCCCCTCTCCTTGGAACCTGTTAGGACTTGGAGGCCTTGTCTGTGGTGCTCCTATGTTTAGAATTTACACTGCCTATGGTTTCTCTTTCGTCATAGTCATTAGCTGTGAGAGGTGAAACTGTCACACCAGCTGGCAAACATGCACCCAAATATGGTCCTGAATAGTCACCTAAGACTGTGACTGTCACACTCTATCCATGGTTCCCTATGGGTCCTCACCTCTCCAAATGTTCTGCCAACATTCCATGCTTTCAGGTGTCCCAAGCCTGTGGGGCAGAACGATTTTAGGAGAAAGGGAGAAAAAAACAAACAGACAGACAAACCCACAGGCTAATAAAGGTTACAACAGGGAAAATTCCTGGGAACCTCAGACCCAGGCTTCCTGGAGAAGTGCTTGGAGCTACAGCCCAGGGACTTGGGCCTACTCAGCCCCAGCAGACAGCTTAGCTTAGGACTGTTACTGTCAGGTTCTCAGCCCCAGAGGGAGGGGAAGAAATTACTCACAGGCTTGATCAAGACTCACCAGCACAAAAATACATAGCTTGCCTGTGGAACCAGGCCCCGTTGAGGATGGGGTCTCTGCAGAGGGCCCCTGCCTGCCTACAAAATGGTAGCAAGTAGGAACTCAGCTGTCTTTCTTGTGCAG
Seq C2 exon
ATAAAGACAGCAAACTTCCCTCCAAGGAGAAGAAGAAAAAGAAGAAGAAAAGCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016795:ENSRNOT00000065410:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGGTTCCCAGTAAGAGAA
R:
CTCTTTGCTTTTCTTCTTCTTTTTCT
Band lengths:
231-895
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]