GgaINT0125853 @ galGal4
Intron Retention
Gene
ENSGALG00000004180 | TOR1B
Description
torsin family 1, member B (torsin B) [Source:HGNC Symbol;Acc:HGNC:11995]
Coordinates
chr17:5694255-5694853:+
Coord C1 exon
chr17:5694255-5694516
Coord A exon
chr17:5694517-5694587
Coord C2 exon
chr17:5694588-5694853
Length
71 bp
Sequences
Splice sites
5' ss Seq
CCGGTACCG
5' ss Score
6.65
3' ss Seq
CTGACTGCGTTTCCCCGCAGCGC
3' ss Score
10.92
Exon sequences
Seq C1 exon
ATGGCGGCGGCGGTTACCCGGGGGGCGCGGCGCTTCCCGCCCGGTGGCGGCGGGCCGGAAGCGGGGCCGTTCGGAGGCGCCATGCCGCGGGCGGCCGTGCTGCTGTGGCTGCTGCTGCCGGGGCTGGCGGCGCTGGAGCCGCTCAGCGTGGGGTTGGCCATCGGCGTGGCCTCGGCGCTCACCGGTTACCTGTCCCATCCCAGCTTCTACTGCAGCTACGTGGAGTGCTGCCCCGGCGCCGGGCACCGCCTCAACGCCACCG
Seq A exon
GTACCGGGGAGCGGGGAGGGGCGCGGGTTGCGGGGCGCGGAGGGCTCGGCGCTGACTGCGTTTCCCCGCAG
Seq C2 exon
CGCTGCGGGAGCAGCTGGACGGCAGGCTGTTCGGGCAGCACCTGGCCAAGGAGGTGGTGCTGCGGGCGGTGACGGGCTTCAGCAACAACCCCAGCCCCAAGAAGCCGCTGACGCTGTCGCTGCACGGCTGGGCCGGCACCGGGAAGAACTTCCTGAGCCAGCTGCTGGCGCGGCACGTGCACCCCGCCGGGCTGCGCAGTAAATTCGTGCACCTCTTCCTGGCCACGCTGCACTTCCCGCACCCGCAGCGCGTGCCGCTGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004180:ENSGALT00000034684:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=PU(13.4=27.9)
A:
NA
C2:
PF063096=Torsin=FE(69.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTCCCATCCCAGCTTCTA
R:
CTGGGGTTGTTGCTGAAGCC
Band lengths:
168-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]