GgaINT0126014 @ galGal3
Intron Retention
Gene
ENSGALG00000002982 | F1NAR8_CHICK
Description
NA
Coordinates
chr17:7607173-7607668:-
Coord C1 exon
chr17:7607560-7607668
Coord A exon
chr17:7607347-7607559
Coord C2 exon
chr17:7607173-7607346
Length
213 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
GCTGTTGCATCTCTCCACAGCTG
3' ss Score
9.92
Exon sequences
Seq C1 exon
AAACCGGAGTACGATGCAGCCCTCGTGGGCCTGGTCCGGCTGTTCTCAGTGGCCATCGCTGCTGTGTCGATGGATAAAGCTGGGAGGAAGATCCTTCTCTTTGTATCAG
Seq A exon
GTGTGTGTCTCTGTCTCAGGTTGTGCAAAGGAACCTTTTCTCTAAGGATTTCCAGTAGCTTTGTAAATGTGCAGGAGTGGAGGCTTCCACCATGCAGGACTGTGGAAGGGTGTTTTCCCTTCGGGGGAGGCTCAGCTCCAGAGTATCACATCCAGAGCCGTCACACGGATTGCTCTCCCTTTCATCCTTCTGCGCTGTTGCATCTCTCCACAG
Seq C2 exon
CTGGAGTCATGTTGGCCTCCAACCTGACCATGGGGCTCTACATCCACTTGGTGCCGTCTTCTCAGAATAGCACCATCGCCAACAGGACCCTGGGGAGCCTTGCCAGCCCTCCTGCTGAGCCCACCAACTACATCACCCTCATCCCCCTCCTGGCCGCCATGTTCTTCATAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002982:ENSGALT00000004719:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=PD(10.6=86.5)
A:
NA
C2:
PF0008319=Sugar_tr=FE(14.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTACGATGCAGCCCTCGT
R:
CATTATGAAGAACATGGCGGCC
Band lengths:
276-489
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]