HsaINT0152349 @ hg38
Intron Retention
Gene
ENSG00000160326 | SLC2A6
Description
solute carrier family 2 member 6 [Source:HGNC Symbol;Acc:HGNC:11011]
Coordinates
chr9:133473415-133474088:-
Coord C1 exon
chr9:133473980-133474088
Coord A exon
chr9:133473601-133473979
Coord C2 exon
chr9:133473415-133473600
Length
379 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GGCCACCTGTCTGTCCACAGCGG
3' ss Score
9.7
Exon sequences
Seq C1 exon
CCCCCCAAGGACGACGCAGCCATCGTTGGGGCCGTGCGGCTCCTGTCCGTGCTGATCGCCGCCCTCACCATGGACCTCGCAGGCCGCAAGGTGCTGCTCTTCGTCTCAG
Seq A exon
GTAAGCACCCTGCAGGCAGCCCTCCTGCCCCACTCCTCCGCATGGGTCAGGGCTGGGCTGGGTGTGCAGGCCTGCCTCGGGGTGGGGCTGTGTGGCTGGGAACTGCAGAGCACCTGCCTCCCTAGCATCGGCAGGGCCCTGGCCCAGGCCAGTGGTCCAGAAAGGTCCGCTGGGGCTCCGAGTGGACACACTGGCTGTGACACTCCACGGTGGGAGCCTAACACGCGGCTGGAGACAGAGCTTGCTGCCCTGCTGGGGGTCTCTAGTCCCAGACACGAGCTGGACCACGCAAGTATCAAGGGGCTCTGCAGAAGGAGCTCTGAGAGAAACAGCTGGCTCAGAGGGTCCTGGCCCCACGAGGCCACCTGTCTGTCCACAG
Seq C2 exon
CGGCCATCATGTTTGCTGCCAACCTGACTCTGGGGCTGTACATCCACTTTGGCCCCAGGCCTCTGAGCCCCAACAGCACTGCGGGCCTGGAAAGCGAGTCCTGGGGGGACTTGGCGCAGCCCCTGGCAGCACCCGCTGGCTACCTCACCCTGGTGCCCCTGCTGGCCACCATGCTCTTCATCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160326:ENST00000371899:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=PD(11.4=94.6)
A:
NA
C2:
PF0008319=Sugar_tr=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGACGACGCAGCCATC
R:
ATGATGAAGAGCATGGTGGCC
Band lengths:
288-667
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains