HsaINT0152349 @ hg19
Intron Retention
Gene
ENSG00000160326 | SLC2A6
Description
solute carrier family 2 (facilitated glucose transporter), member 6 [Source:HGNC Symbol;Acc:11011]
Coordinates
chr9:136338227-136339210:-
Coord C1 exon
chr9:136339102-136339210
Coord A exon
chr9:136338373-136339101
Coord C2 exon
chr9:136338227-136338372
Length
729 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
CTGCCTCCTCCTCCGAGCAGGCT
3' ss Score
7.84
Exon sequences
Seq C1 exon
CCCCCCAAGGACGACGCAGCCATCGTTGGGGCCGTGCGGCTCCTGTCCGTGCTGATCGCCGCCCTCACCATGGACCTCGCAGGCCGCAAGGTGCTGCTCTTCGTCTCAG
Seq A exon
GTAAGCACCCTGCAGGCAGCCCTCCTGCCCCACTCCTCCGCATGGGTCAGGGCTGGGCTGGGTGTGCAGGCCTGCCTCGGGGTGGGGCTGTGTGGCTGGGAACTGCAGAGCACCTGCCTCCCTAGCATCGGCAGGGCCCTGGCCCAGGCCAGTGGTCCAGAAAGGTCCGCTGGGGCTCCGAGTGGACACACTGGCTGTGACACTCCACGGTGGGAGCCTAACACGCGGCTGGAGACAGAGCTTGCTGCCCTGCTGGGGGTCTCTAGTCCCAGACACGAGCTGGACCACGCAAGTATCAAGGGGCTCTGCAGAAGGAGCTCTGAGAGAAACAGCTGGCTCAGAGGGTCCTGGCCCCACGAGGCCACCTGTCTGTCCACAGCGGCCATCATGTTTGCTGCCAACCTGACTCTGGGGCTGTACATCCACTTTGGCCCCAGGCCTCTGAGCCCCAACAGCACTGCGGGCCTGGAAAGCGAGTCCTGGGGGGACTTGGCGCAGCCCCTGGCAGCACCCGCTGGCTACCTCACCCTGGTGCCCCTGCTGGCCACCATGCTCTTCATCATGGGTAGGTGTGGTGGTGGCTCAGAGGGGCAGGCTGTCTTGGGTGTTAAGGGATGGGTGATGTGTCTGGGGTGGCTGGAGAGGGGGGTCTCCAGCAGCTCAGCGGAGACAGACACAGCCGCCTCCAGTCACCCCACAGGGCCTGAACCTGCCTCCTCCTCCGAGCAG
Seq C2 exon
GCTACGCCGTGGGCTGGGGTCCCATCACCTGGCTGCTCATGTCTGAGGTCCTGCCCCTGCGTGCCCGTGGCGTGGCCTCAGGGCTCTGCGTGCTGGCCAGCTGGCTCACCGCCTTCGTCCTCACCAAGTCCTTCCTGCCAGTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160326-SLC2A6:NM_001145099:7
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=PD(11.4=94.6)
A:
NA
C2:
PF0008319=Sugar_tr=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCAAGGACGACGCAG
R:
CACCACTGGCAGGAAGGACTT
Band lengths:
254-983
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)