HsaEX0059304 @ hg19
Exon Skipping
Gene
ENSG00000160326 | SLC2A6
Description
solute carrier family 2 (facilitated glucose transporter), member 6 [Source:HGNC Symbol;Acc:11011]
Coordinates
chr9:136338227-136339210:-
Coord C1 exon
chr9:136339102-136339210
Coord A exon
chr9:136338537-136338722
Coord C2 exon
chr9:136338227-136338372
Length
186 bp
Sequences
Splice sites
3' ss Seq
GGCCACCTGTCTGTCCACAGCGG
3' ss Score
9.7
5' ss Seq
TGGGTAGGT
5' ss Score
6.86
Exon sequences
Seq C1 exon
CCCCCCAAGGACGACGCAGCCATCGTTGGGGCCGTGCGGCTCCTGTCCGTGCTGATCGCCGCCCTCACCATGGACCTCGCAGGCCGCAAGGTGCTGCTCTTCGTCTCAG
Seq A exon
CGGCCATCATGTTTGCTGCCAACCTGACTCTGGGGCTGTACATCCACTTTGGCCCCAGGCCTCTGAGCCCCAACAGCACTGCGGGCCTGGAAAGCGAGTCCTGGGGGGACTTGGCGCAGCCCCTGGCAGCACCCGCTGGCTACCTCACCCTGGTGCCCCTGCTGGCCACCATGCTCTTCATCATGG
Seq C2 exon
GCTACGCCGTGGGCTGGGGTCCCATCACCTGGCTGCTCATGTCTGAGGTCCTGCCCCTGCGTGCCCGTGGCGTGGCCTCAGGGCTCTGCGTGCTGGCCAGCTGGCTCACCGCCTTCGTCCTCACCAAGTCCTTCCTGCCAGTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160326_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=PD(11.4=94.6)
A:
PF0008319=Sugar_tr=FE(13.5=100)
C2:
PF0008319=Sugar_tr=FE(10.5=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGACGACGCAGCCATC
R:
GCAGGAAGGACTTGGTGAGGA
Band lengths:
242-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)