BtaEX0033040 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001824 | SLC2A6
Description
solute carrier family 2 (facilitated glucose transporter), member 6 [Source:HGNC Symbol;Acc:HGNC:11011]
Coordinates
chr11:104419135-104420062:-
Coord C1 exon
chr11:104419954-104420062
Coord A exon
chr11:104419444-104419629
Coord C2 exon
chr11:104419135-104419280
Length
186 bp
Sequences
Splice sites
3' ss Seq
GGCCTCTGGTCTGTCCACAGCGG
3' ss Score
9.17
5' ss Seq
TGGGTAGGG
5' ss Score
4.66
Exon sequences
Seq C1 exon
CCTCCCAAGGTTGACGCCGCCATCGTGGGCGCCGTGAGGCTCCTGTCCGTGCTGATTGCCGCCCTCACCATGGACTTGGCCGGCCGCAAGGCCCTGCTCTTCGTCTCGG
Seq A exon
CGGCCGGCATGTTTGCTGCCAACCTGACCCTGGGGCTATACGTGCACTTTGGTCCGAAGTCTCTGGCCCCCAACAGCAGCATGGGCCTGGGACGCGAGGCCCTGGCGGGCACAGAGCAGCCCCTGGCCACGCCCACCAGCTACCTCACCCTGGTGCCCCTGCTGGCCACCATGCTCTTCATCATGG
Seq C2 exon
GCTATGCCATGGGCTGGGGCCCCATCACCTGGCTCCTCATGTCGGAGATCCTGCCGCTGCGGGCCCGTGGCGTGGCCTCAGGGCTCTGCGTGCTGGTCAGCTGGCTCACCGCCTTTGCCCTCACCAAGTCCTTCCTGCTGGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001824_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(7.8=100)
A:
PF0008319=Sugar_tr=FE(13.5=100)
C2:
PF0008319=Sugar_tr=FE(10.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGTTGACGCCGCCATC
R:
GTCACCAGCAGGAAGGACTTG
Band lengths:
249-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development