RnoEX0082169 @ rn6
Exon Skipping
Gene
ENSRNOG00000005900 | Slc2a6
Description
solute carrier family 2 member 6 [Source:RGD Symbol;Acc:1309317]
Coordinates
chr3:5569606-5570610:-
Coord C1 exon
chr3:5570502-5570610
Coord A exon
chr3:5569986-5570165
Coord C2 exon
chr3:5569606-5569751
Length
180 bp
Sequences
Splice sites
3' ss Seq
AGGTACCCATGTGTCCACAGCAT
3' ss Score
6.08
5' ss Seq
TGGGTAGGA
5' ss Score
5.12
Exon sequences
Seq C1 exon
CCCTCCCAGCAGGATGCAGCTATAGTTGGTGCTGTGAGGCTCCTGTCTGTGCTGATTGCCGCTGTCACCATGGACCTGGCCGGCCGGAAAGTCCTGCTCTATGTGTCAG
Seq A exon
CATCCATTATGTTTGTCGCCAACCTGACGCTGGGGCTGTATGTCCAGCTTGTGCCAAGGACTCTGACCCCCAACAGCACTGTGGAGATCGTGACGCTTGGGGGCACGGAGCAGCCCCCAGCCGCGGCCTTCAACTATCTCACCCTGATACCCCTGCTGGCCACCATGCTCTTCATTATGG
Seq C2 exon
GCTATGCCATGGGCTGGGGGCCCATCACCTGGCTCCTCATGTCTGAGGTTCTGCCCCTGCGTGCCCGTGGTGTGGCCTCAGGGCTCTGCGTGCTGGTCAGCTGGCTCACAGCCTTCGTCCTCACTAAGTACTTCCTGCTGGCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005900_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(11.8=100)
A:
PF0008319=Sugar_tr=FE(19.7=100)
C2:
PF0008319=Sugar_tr=FE(15.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCAGCAGGATGCAGCTAT
R:
TGCCAGCAGGAAGTACTTAGTG
Band lengths:
250-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]