MmuEX0043036 @ mm9
Exon Skipping
Gene
ENSMUSG00000036067 | Slc2a6
Description
solute carrier family 2 (facilitated glucose transporter), member 6 [Source:MGI Symbol;Acc:MGI:2443286]
Coordinates
chr2:26878239-26879163:-
Coord C1 exon
chr2:26879055-26879163
Coord A exon
chr2:26878608-26878769
Coord C2 exon
chr2:26878239-26878384
Length
162 bp
Sequences
Splice sites
3' ss Seq
TGAGGTGCCATGATCCACAGCAT
3' ss Score
3.09
5' ss Seq
TGGGTAGGA
5' ss Score
5.12
Exon sequences
Seq C1 exon
CCCTCCCAGCAGGATGCAGCGATAGTTGGTGCTGTGAGGCTCCTATCTGTGCTGATTGCTGCTGTCACCATGGACCTGGCGGGCCGAAAAGTTCTGCTCTATGTGTCAG
Seq A exon
CATCCGTCATGTTTGCTGCCAACCTGACACTGGGGCTCTACGTCCAGTTTGTGCCAAGGCCTCTGACCCCCAACAGCACTGTGGAGATCGTGACCCTGGGGGACACAGCCTTCAACTATCTTACCCTGATACCCCTGCTGGCCACCATGCTCTTCATTATGG
Seq C2 exon
GCTATGCCATGGGCTGGGGTCCCATCACCTGGCTCCTCATGTCTGAGGTTCTGCCCTTGCGTGCCCGTGGTGTGGCCTCAGGGCTCTGCGTGCTGGTCAGCTGGCTCACAGCCTTCGTCCTCACTAACTACTTCCTGCTGGCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036067_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=PD(10.9=89.2)
A:
PF0008319=Sugar_tr=FE(12.0=100)
C2:
PF0008319=Sugar_tr=FE(10.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCCCAGCAGGATGCA
R:
TGCCAGCAGGAAGTAGTTAGTG
Band lengths:
252-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: