GgaINT0126077 @ galGal3
Intron Retention
Gene
ENSGALG00000008898 | Q6R6I2_CHICK
Description
NA
Coordinates
chr17:1412485-1413433:-
Coord C1 exon
chr17:1413371-1413433
Coord A exon
chr17:1412586-1413370
Coord C2 exon
chr17:1412485-1412585
Length
785 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAT
5' ss Score
7.84
3' ss Seq
TTTGCTCACACTAATCGCAGGCT
3' ss Score
6.22
Exon sequences
Seq C1 exon
AGTAAAAAAAGGAACTATGAAAACCTCGACCAACTTTCCTATGACAACAAGCGAGGACCCAAG
Seq A exon
GTATATATGCATGGAAATGCACGCCGCCCACCAACCTAACTAGCAAATGAAAAATAGCCACAGCCACCAGAAAAAATAAAAATAAAATAAAAAGAAAAAAGAGAAAGAGAAAAAAGAAAAGAGAAAGAAAGAAAAAAGATCCATGACTATGTTTCTTGGTAGCACGTTTTTATGTTGAGATAGTTTGGTTTGGACTTGAGAATGGAAACCTAGCCAGCTGACCCTGGAAGGATTTCTTTTTGAGACATGCATGTGAACCAGTAATTAACTTGCAAGTTTTTTTTGTTGTTGTTTTTTTTTTTGGAAAGTTGAACCAACCCCCTTTCCTCCCCAAAGGAAATGGTTCCTTGGTGTAAGTCGTTCACTTTTACTCCCAAAGGTTAACCCTGTGCAATGTTTTTTTTTCATTTCCCATGTTTTTGAAAAACAACACTCGTTTGAGTTTTCAATTGCATTTCAAAGCCTTTTTCTCTTTCCTGTACAATGCACGCCTCTTTTTGGGTCTTGATTGACTTCAGTTTGCATGCACAGTGCAAAAAAAACCAAAAAAAAACCAAAAAAAAAAAAAAAAACCAAAACCTTAAAAGAGAAAGGAAGGAAGGAAAGAAAGAAAAGAAAGAAAAGAAAAGCAAAGAAAATAAGAAAAAAACCTAGCTGTAACCAATCTTATTTAGCAGACTTTTGTGCAGTTTAATGAATTTTCTTGACCCTTTTCTAGATAGTATGGCTCTCACAAGCAGTCCTCAGTCTCCCACACTAACCAGCTTTGCTCACACTAATCGCAG
Seq C2 exon
GCTGAGAAAGTGCTGCAGTTTGACCCCGGGACCAAAAATGTGACGTCGCTGCTGCTGGAGGCTAAAGAGCTGGAGGCTCGCGTCATCATCCTCTCCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008898:ENSGALT00000040370:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=NA C2=0.109
Domain overlap (PFAM):
C1:
PF0109423=ANF_receptor=FE(7.2=100)
A:
NA
C2:
PF0109423=ANF_receptor=FE(12.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]