GgaINT0126096 @ galGal3
Intron Retention
Gene
ENSGALG00000001169 | CRB2
Description
NA
Coordinates
chr17:9705814-9706292:+
Coord C1 exon
chr17:9705814-9705825
Coord A exon
chr17:9705826-9706152
Coord C2 exon
chr17:9706153-9706292
Length
327 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
3' ss Seq
TCTGTTTTGTTGCCCCACAGTTA
3' ss Score
10.1
Exon sequences
Seq C1 exon
GCTTACAAGAAG
Seq A exon
GTAGAAAGTGGTTCCTGTTATTGTTTCCATCTGACATATCGGATGCAAAGGGAAGTGATTTGCAGATCATGATCAGTGCAAGCAGCTGTTGAGAATGTACCTGTGTGTCAGTGTGCCTTTTCACAGGCATACTGTAGGTTTAGACATTGCTGAGGTTGACATACTCTGCCAGTAGTGTGGCCTGTTTGCTCAGAAGGAACTGTCTTTTTCCTCTGCCCACAAATGCGTATGAAGACTAACTCCAGTCAGCTCAATTTGCTCTTTCCTCACATGAGCTCAACAACAAAATCTGGAGGTTCTGCATCACTCTGTTTTGTTGCCCCACAG
Seq C2 exon
TTACCAATGTGACTGCAGTGACACAGGCTTTGAAGGGGACCACTGTGAGTTGGATATCCTGGAGTGTGCCTCTGAGCCCTGTCTGAACAATGCCACATGTGTTGAAGGAATCAAGAACTACAGCTGTGCCTGCTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001169:ENSGALT00000038754:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=FE(10.5=100)
A:
NA
C2:
PF0000822=EGF=PD(41.2=29.2),PF0000822=EGF=PU(80.6=52.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]