BtaINT0043712 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014391 | CRB2
Description
crumbs family member 2 [Source:HGNC Symbol;Acc:HGNC:18688]
Coordinates
chr11:94511697-94512191:+
Coord C1 exon
chr11:94511697-94511892
Coord A exon
chr11:94511893-94512051
Coord C2 exon
chr11:94512052-94512191
Length
159 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
GGGCCGCGCGCCCCCTTCAGGTT
3' ss Score
7.88
Exon sequences
Seq C1 exon
GCGTGACCTGCGAGACGGAGGTGGACGAGTGCGCCTCGGCGCCCTGCCTGCACGGGGGCTCGTGCCTGGACGGCGTGGGCTCATACCGCTGCGTGTGCGCGCCGGGCTACGGGGGCGCCAGCTGCCAGCTGGACCTGGACGAGTGCCAGAGCCAGCCGTGCGCACACGGGGGCGTGTGCCGCGACCTGGTCAACGG
Seq A exon
GTGAGCGGGAGGCCGTGCCCCCGGGCGGGGAGGCTGGGCGGGGAGGCTGCGCGGTGTGCCGGCGCGGGGGTACGGGGAGGGGCGCGAGGCAGGGTACGGTGGAGGCAGGGGGCTGGGGGCTCGGGCACGTCCTCAGCTCGGGCCGCGCGCCCCCTTCAG
Seq C2 exon
GTTCCGGTGCGACTGCGCGGACACGGGCTACGAGGGCGAGCGCTGCGAGCTGGAGGTTCTGGAGTGCGCGTCGGCGCCCTGCGCGAACAACGCGTCCTGCCTCGAGGGCCTCGGGAGCTTCCGCTGCCTCTGCTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014391:ENSBTAT00000043337:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(6.5=3.0),PF0000822=EGF=WD(100=47.0),PF0000822=EGF=PU(53.1=25.8)
A:
NA
C2:
PF0000822=EGF=PD(43.8=29.2),PF0000822=EGF=PU(80.6=52.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACGGAGGTGGACGAGTG
R:
ACTCCAGAACCTCCAGCTCG
Band lengths:
250-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development