GgaINT0126179 @ galGal3
Intron Retention
Gene
ENSGALG00000007196 | STXBP1
Description
NA
Coordinates
chr17:2829816-2830202:+
Coord C1 exon
chr17:2829816-2829876
Coord A exon
chr17:2829877-2830136
Coord C2 exon
chr17:2830137-2830202
Length
260 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACA
5' ss Score
5.19
3' ss Seq
CACATCCCCTTCCCTCGCAGACC
3' ss Score
11.24
Exon sequences
Seq C1 exon
GGAGGTGACCCGGTCCCTGAAGGAGTTCTCATCAAGCAAGAGGATGAACACAGGCGATAAG
Seq A exon
GTGACATCTCCCAGTAGGAGCTCGTGCATGGCCAAGGCTCTTGGGGACACCACTAAGGGCTGTGGTGAAGCCTGCTGGGGCCATGGGTCCTTTTCTGGGGGGAAGGCTAGAGGGGGGGCTGAGAAAATAGGGAACAGTGAACCCCCCAGCGTGAGAACAAGACCCCTAAAGAAGGGGACGCTCGGACAGTGCTTGGTAGGGTTGTGCCCTCCCTCCTTGGTGTCTCCACGGGTGGGTGACCACATCCCCTTCCCTCGCAG
Seq C2 exon
ACCACCATGAGGGACCTGTCCCAGATGCTGAAGAAGATGCCACAGTACCAGAAGGAGCTGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007196:ENSGALT00000040064:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=NA C2=0.182
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(4.3=100),PF140711=YlbD_coat=FE(20.0=100)
A:
NA
C2:
PF0099518=Sec1=FE(4.6=100),PF140711=YlbD_coat=FE(21.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]