GgaINT0126191 @ galGal3
Intron Retention
Gene
ENSGALG00000002626 | F1NH64_CHICK
Description
NA
Coordinates
chr17:8010633-8014926:+
Coord C1 exon
chr17:8010633-8010871
Coord A exon
chr17:8010872-8014775
Coord C2 exon
chr17:8014776-8014926
Length
3904 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCCTGCTTGTGTTCTTGCAGCTC
3' ss Score
11.15
Exon sequences
Seq C1 exon
CCCTGAACTCCCCGACGAGCCGAGGCCCCATGGCCACTCCATCCCTGCACCCGTCCATCGGGCCGGGCATCGGCTCCTCGCTGGGCTCCCCGGGCCAGCTGCACTCACCCATCAGCACCCTGAGCTCACCCATCAATGGCATGGGGCCACCCTTCTCCGTCATCAGCTCCCCCATGGGCCCACACTCGATGTCTGTCCCCTCCACGCCCAGCCTGGGATTCGGCACCAGCAGCCCACAG
Seq A exon
GTGAGGGGAGGGCGGCAGGGATGTCGCTGCTGCTTTGATGGGACAGAGACGTGGTTTTGGGGTTCGATCCGGACCCACTTCTGGTTACGCTCTGCCAGGTTCTGAGGAGTGAAACCCCACTGCAGATAGCACAGGGAGCAAAACCCCATTGCAGACAGCACGGAGACGTAGGCAGGCGCCACAGGGTGGCAAAAAGCAGAACCCGAAGGGGGAAATGAAGCCCGAGGCTTCCTGCTGCTCCGGCGTCATACGGGGGACCGCTGGGGCGCAGAGTGGGACCACAGCCGTCCATCAGCTGTCCCCTCCCTGCCCACTGCCCCTCTTTCCCTTTGCAGAGGGAGGAACTGGTATTGGTTTGCTGAAGATTATGTAAAAAAAAACTCCAACCAGCAAGAGATAAGCTCTTTTTAAAAATAGCAAGATCGGGGAGAGCTGGCCAGCCCCTGCCACCTGTTGCTGGCTGCTTGCACGATATATGTTTAGTAAAAGGGCAGATTAAGGAATTGGCTACCACCTGCCACTCAGTGCCGGTTTATTTATCCCAAGCCCTCGCTGGGAGTCAAGCACCTGCCAGCACCTTTATTTTTAAATATTGGCCTGATTTATTTCCAGCAATAACGGGGTCTTTTTGCCCTGGCTGGGGAGGGACGTGCCGTGTGGACGCCGTCAGCCATCCCCGATGGAGAGGCAATGGGAGAGGCAGCGGTAGGGTTTGCCACTGCTCCTGTAGGTTCATGGGGAGCTCTCTGTGCCGCCTCCTATCCCACGGCAAAGGGAAGGGGAACTGAAATAGTGCCTTGGAATGGGCAGTGCCAGCTCTGAAGTGGTGGGGAAGGAGTGGGAAGCAAAGTGGGGGTGAGCCGCCAGCAGGGGGGGGAGGGAACGAGGAAACTGCTGCTAGGCACAATGCGGTGTAGGAGCTGAAGGAACCGAAATAAAACCCAACCACAGGGCAAAAACGGGAACCGAGAGCGTGGTCAGATGGTGCTGGGGAGCGAGCTGGCGGCACGGCGTCTCCCAGCCCTGGCGGCACAGTGCCGGCACCACCGCTCGCACACGGACGTGTCTTAAGTGGTTTTCCTCCAGGAGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTTACACGATGCTTTGTGGGTCTGGGCACGTTATAGATGGAAAAAGAGGAAAGCTCTGGTTGCCATTAGACCAAAGGGGAGTTGATCCCTCGGGCAATGAGCTAAAAAGGGAAAAGAGAGGAGCCGAGGAGTCCCGGCTCATGGGGCTGCCGCGTCATTGGGGAAGCAGAGCAGCAGTTCTGTGTCCCTGCTCCGTGCTGTGCTGGGTGCGCTCCCATGGCACGTGCTCCCGGCTCTAGGCCAGCCATAGGGGGAAGGAGTGGGGCTGGCGCCAGGGCGGTGTGGGAACCTCATAGCACACGTGGGGCTGGGGCTGCAGGAGGAACTGGTGACTTCTCCCATCCCGGGGCTGACTCAGCTCCAGCAGGGCTGAGTCGTGGGGGCAGTGGCACCCCATGTCCTGGTACCCTCCAGAAGGAGGATGCTCACGTGCTTCTCACGTGGAGTTTGGGGGCTGCGGGTGCTTGGTGGTGAAAAGCTTATTTTAGCAGATATCTGAAGTCCTCTGCCCCACCTTGGTGATTGGCTCCAAGAAGTATTCTGGGGGTGCTGCTAGAGCCAGTGACCTCAAAGCCATGTGCTGTGCAGCACTGTGTGGCTCATGCCTTTCTCCCTGGTGCTGCGTCACATCCCCAAGGGATGCTCCTGCTGCATCCCTGCTCACCGGGTTGGGTTTGCCTCTCTGTGTGCTGTGGTTATCAGCCCTCTGCCTGCCAAGTATTCCCACCAGCTCAGATGCTTGAAAGGCAGAGGAGTGGCTGTGGTCTTCTAATGGACAGAACACGAGCCCCGGGACTTCCCTGAATTAATCTGTGACAAGTGTAATTGCCCAGTGTCTCTATTAAGGAAGAGAAAGACAACAAGCCAAGACACAAATCCTGTCTGTCCCGCTTGGTTTTAGCAGTTGGGAGGAGCTGCAGAAGCCTGGCTGTCCATACAGAGCCCCATAATACCTGCCCTGGGCCGGGCTTTGGTCCCCATGGGGTCCCTCCTGCATCCCTGTCCCCTCTCAATGGGACTGTGCGGGAGGGCACAGTGACACCAGCACAGAGCATTTTGCAGAGGGGTCTTTCTGATGACATTGAGCATAAAATCATGTTGCAGAGAAAATCCCTGAGGCCCTGAAGGCGTGGATGGCTGCTGCAATGGGGCCAGCAGCCTGCAACCTGCAGGACAGGGCTGCAGCTCTGTCCTCACACCTTTCCTTCACACTTCAATGGGTTATTTGGGCTCTGCAGCCATGGGCGGGGTAGCAGAGCACAGGCTGCTGTGAGCTTGTTTCCACTGCCAGGACTGAGCTTGTCTCAGAGCTCCGTGCCTCAGTTTCCCTCTGTGCAGGACGGGAGCACCGTCCTGTCCTGCCAGGAATGTGGAAATCAAGTCAGGAATGTTGCAGTGAAATCCCAGAGCTGCTGACGGGGCCATGCCAGCCCCTCTGTTCCAGCTTTCTTTGCTTTGTTTCCCAATTCTTTTGGGCTCTGCTGAAGGCTGTGAATGGCAGGGAAGCATCCCACACCTGCAGCTCTGCAAAGCCAGGCCTTGTTGTACCTGGCTCCCTGACCATTGGGCTCAGGTGCCCACATCCTCCTCTGGGCTCAGCACTGTGGGTTTTAAGCTGTTTGTCCCATTTGAGGCTTGTCCCCTGTTCCATACATTTTCCTGCCTGTACCCAATCCCATGTGCTCCCTGCTTGTGTTCTTGCAG
Seq C2 exon
CTCAACTCACCCATGAACCCCGTCAGCAGCTCAGAAGACATCAAGCCACCCCTGGGGCTCAATGGAGTCCTCAAAGTGCCAGCACATCCCTCAGGAACAATGGCCTCCTTCACCAAGCACATATGTGCCATCTGCGGGGACAGATCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002626:ENSGALT00000004139:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.937 A=NA C2=0.471
Domain overlap (PFAM):
C1:
PF118253=Nuc_recep-AF1=PU(69.0=98.7)
A:
NA
C2:
PF118253=Nuc_recep-AF1=PD(29.2=64.7),PF0010513=zf-C4=PU(15.7=21.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]