GgaINT0126348 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NFI9]
Coordinates
chr17:278459-279353:+
Coord C1 exon
chr17:278459-278512
Coord A exon
chr17:278513-279317
Coord C2 exon
chr17:279318-279353
Length
805 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATC
5' ss Score
7.46
3' ss Seq
TTTCCTCTTGTGTCTTGCAGGAG
3' ss Score
12.58
Exon sequences
Seq C1 exon
GAGAAATGGGAACCAAGGGACCCCCTGGGAAAGCAGGACCACCCGGAATAAAAG
Seq A exon
GTAATCCATAATATATTTAGCTTTAATCCATAAAATATTCTGTGCATACATAGGATAACTGGATCTACAGAGATGAAACACTTAGGAAACAACTCTCAAGTAGTATAGGTCAGGCAGATTTGAGATGTGGATCTGGCATGGGATGGGTACTGGGAACTGTGTCCTTGAATGGGATCATGTCAGAGGAAGATATTACTTTTCTTTACAAAGTTTCTCTTATCAGCCCCCTAAAATCAGACCTCTCCCCATTCTCCTATTCTTGGAGTGGAGACAGCTGGTACAGGGTGAAGCAAGGAAGGAATGGGCTGACCGCCCCCAAAATAAGGAGCTGACTTATTTCACCTCTGGCTCTGCACAAGCTGGGAGCAGGACTTCATGAAAGCATGTTGGACTGTGCCTCATGAAGGATTCAAGGCCATGACCCAGCCTCTGGAAACAAATTGCCACTTCCAGCTCCCAGCACAAGAGCCACTTCAGCAGAACCCCCCAGCAGGAGGTGGGTGAACGTATTAAAACAGCACCTATTGCTTGAAATCTGACAGATCCCAGACTGGAAACAGCCTACACAAGAAAGAGAAGGAGCACTTATCGCTTGCCTGCAACCTGCTGCTGTTTTGGGGAGCACTGCTGGCCCTGCCTTCAGCCAAGGCAGTCAGCAGAGCACCGTGGCTTTGCACCATTTCAACAGTCTCTCCTGTACATTTTGGAATGTACCTGGAGGGGCAGGAGCAGCTGCCTGTGGAGCTGAAGTAATGCATTTCCTTTGAGCCACCTGCAAAAAGCATTTTCCTCTTGTGTCTTGCAG
Seq C2 exon
GAGCAGCTGGAGACCCTGGATTGCCAGGACCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009151:ENSGALT00000014902:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(29.5=100)
A:
NA
C2:
PF0139113=Collagen=FE(19.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]