RnoINT0060321 @ rn6
Intron Retention
Gene
ENSRNOG00000009342 | Fcnb
Description
ficolin B [Source:RGD Symbol;Acc:621222]
Coordinates
chr3:6621818-6622180:-
Coord C1 exon
chr3:6622127-6622180
Coord A exon
chr3:6621854-6622126
Coord C2 exon
chr3:6621818-6621853
Length
273 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
ATTGTGTTCTCTTCCCTTAGGAG
3' ss Score
10.34
Exon sequences
Seq C1 exon
GAGAGAGTGGCCTTCCTGGACACCCTGGAAAGGCGGGGCCAACTGGACCCAAAG
Seq A exon
GTAACAACTTGGCAGACTGTTGAGGGATGCTAAATTTGGTACCCCAATCTGCGTATAAAAACACAGGGATTGGAGAGAGATGGGGAGGGACTGCCCAACCCAGGTCCCAGTGTCTCTTCCCTGATGGCCGCATGGGTTGCCTGCCCCCTGCCCCTGGTTTCCAGTTCCTCAGTTGACCCTAACCAGTGCCTGCCTTGTGTGGCTAGCCCCTTTTGGTGGGTCTCCTGATTGACCAGATGCTTTGGGCACCAGTATTGTGTTCTCTTCCCTTAG
Seq C2 exon
GAGACCGAGGAGAGAAGGGAGTGCGTGGAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009342:ENSRNOT00000012494:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(29.5=100)
A:
NA
C2:
PF0139113=Collagen=FE(19.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]