GgaINT0126352 @ galGal3
Intron Retention
Gene
ENSGALG00000009151 | FCN3
Description
NA
Coordinates
chr17:662070-663265:+
Coord C1 exon
chr17:662070-662204
Coord A exon
chr17:662205-662935
Coord C2 exon
chr17:662936-663265
Length
731 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TGAGTGTGTACTCCCTGCAGGAG
3' ss Score
8.62
Exon sequences
Seq C1 exon
GAACCTGTGAACTCCGCGTTGACCTGAGAGACTTTGACAACAACTACTATTTTGCCAAGTATGCTTCCTTCCGAGTTTTAGGAGAGTCTGAGAAATACAAACTGGTTCTGGGAGACTTCCTTGGTGGAAATGCTG
Seq A exon
GTAAGTGAGCAACTTACTGGGAAAGACTTTCCCAGAGCATTTCAGAAACATTCAGCATTTACAGCCTAGAGCAGTGTCACACAAAGTCCTTGCACAACCTGCATTTTGGGTCAGTATTTAAAAACTGCCTATGGTGACCCAGGTACGGTGACCTGTGCAGGGAAGGAAGGGGATATCTACCCCCCACAGATGTGTGACCCAGAGCGGTACCTACAAGCCCTGCCACATACTTTAGCAACAAATGCAGAATCAGGCTGCATCTCCTTAATTCCTGGTATGCTGGGGTTGTGTTGTTGTTTCTTCTTAAAAAACATACAAATCCTCTGCAAAATTCAATATCCCTCATGTGGGAATGAGCGAAACCAACATGTGGGATAGCAGTGCTCTGAGTTTAGGAGGCTTTGTACACTGTCTCCTAGTCCAGACCTCAGTAAATGCAGAGAATGCAAGTGGTGCAAGGGGATGGGCACCTGTATGACTGCAGGCAGAATCTGGCCCACATGCTGCACAGCCATAGGTGGGTTCTCTGTGTGTGTTAGCAGTCCTGGCAGAACTCAGGATACCGCTCCTTTTCTCTGTGCCCAAGGAGACTGTGCAGGCAACCAAGAGAACAGGATTCATACAAACTGCCTTACATCCAGCCATGCCTCTGTTGCCCAGCAGTTGGTGCTCAGGAACATGAGGTTCCCTTTTGCACTACTGCAGTAACTGTGAGTGTGTACTCCCTGCAG
Seq C2 exon
GAGACTCCTTATCGTACCACAAGGACATGTCATTTTCAACAGCAGACCAGGACAATGACATGAGCTCCTTCAACTGTGCCACAGCCTACAAGGGAGCGTGGTGGTACAATGACTGCCACTACTCTAACCTCAATGGCATGTACTGGCTGGGTGCACATGGGAGCTATGCTGACGGCATCAACTGGAAGACGGGCAAAGAATACCATTACTCCCATAAACGAACAGAAATGAAATTCAGGCCAATTTAACAGCACAGGAGGATGTCTGACTGGCACTGACAGGTGCCACCCAACAGCCAACAGAAGACAGAAAACATCATATTGTTTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009151:ENSGALT00000014902:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(21.1=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=PD(38.0=97.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAAGTATGCTTCCTTCCG
R:
TCAGACATCCTCCTGTGCTGT
Band lengths:
351-1082
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]