HsaINT0063323 @ hg38
Intron Retention
Gene
ENSG00000160339 | FCN2
Description
ficolin 2 [Source:HGNC Symbol;Acc:HGNC:3624]
Coordinates
chr9:134886430-134887520:+
Coord C1 exon
chr9:134886430-134886564
Coord A exon
chr9:134886565-134887167
Coord C2 exon
chr9:134887168-134887520
Length
603 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
TCACATTTCCTCCTGCACAGGAG
3' ss Score
7.92
Exon sequences
Seq C1 exon
GAACCAGCGAGCTCCGTGTAGACCTGGTGGACTTTGAGGACAACTACCAGTTTGCTAAGTACAGATCATTCAAGGTGGCCGACGAGGCGGAGAAGTACAATCTGGTCCTGGGGGCCTTCGTGGAGGGCAGTGCGG
Seq A exon
GTGAGTGTCTGCTTGGGGCTGTGTGGCCTGGGCTTCTGAGGGGGGTTTGGGAAGTGGAGAGAGCGTGCTCAGTGTCCTGGTAGCCTTGTGGAAGAGGCCTCACCTCTCTGAGCCAATTCGTCCATCTCTACATGCAGACACTAACATCTGTGCTCTGTGTAGCATGGGGGTCATGGGACACATCAGTGTATGACTGCAGAAATCCCAGCAAGGGCATCTGGTAGGAAGGAAGTCTCTGCAGAGCAGGGACCTATGCACGGTGACAGCAGCTGATATCTCTGCGGGGCATGGCTGGAAGGGGTCTGCCATGATGGAATCCAGAGTAGAGAATGATGATCCTGACCCCTGCCTCCTGTTCTTCTGTGAAATAAACATAGTACACATTAGGTGGCAGGGCTAGACCTAAAGACAATTTGCCAAGACCACTGCCAACAGCAGGGCAGTATTCACTGGAGTCATGGATTGCACTTCTTGGATTGTGCAGTGCACAACCTGCCTAACCATACATGGAGGACACACCAGGCCAGGCCTCAGGTATAAAGACTTATACTGTCTGTAATGATGTTACTGCCTGTAACGATGCTCACATTTCCTCCTGCACAG
Seq C2 exon
GAGATTCCCTGACGTTCCACAACAACCAGTCCTTCTCCACCAAAGACCAGGACAATGATCTTAACACCGGAAATTGTGCTGTGATGTTTCAGGGAGCTTGGTGGTACAAAAACTGCCATGTGTCAAACCTGAATGGTCGCTACCTCAGGGGGACTCATGGCAGCTTTGCAAATGGCATCAACTGGAAGTCGGGGAAAGGATACAATTATAGCTACAAGGTGTCAGAGATGAAGGTGCGACCTGCCTAGCCCAGGCCGGCCTCAGGGTCAGGACGCCTCCACACATAGTTGGTTGGGGGGTAGGGTTGGGAGCTTGGCCCTACGGTTTGTAAAAGAAACACATGTCGTGATTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160339:ENST00000291744:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.024
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(21.1=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=PD(38.0=97.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGTGGACTTTGAGGACA
R:
CGCACCTTCATCTCTGACACC
Band lengths:
352-955
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development