GgaINT0126358 @ galGal3
Intron Retention
Gene
ENSGALG00000001565 | C5
Description
NA
Coordinates
chr17:9042144-9043343:-
Coord C1 exon
chr17:9043252-9043343
Coord A exon
chr17:9042227-9043251
Coord C2 exon
chr17:9042144-9042226
Length
1025 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAAT
5' ss Score
4.44
3' ss Seq
TGGTTGTTGATTTATTGTAGGTA
3' ss Score
7.67
Exon sequences
Seq C1 exon
GATCCAGATGGAGTAAAAGTGGATATCATAGAAGAAAACGACTTTACTGGAATAGTTTCTTTTCCTGATTTCAAGATTCCTCCTAATCCCAA
Seq A exon
GTAAATATATTTAATGTTCTTTGAGAACCTTTAGCATAATTGTACCTTTTCTTAAAGGCTGTCAGAGTGGTTTTTGCTGATACACGGAGTGTGTGTAACTTGCAACTTGGTAATTTGTGACATTTCACATAATGTGTTCTAATGGTATAGATAAAGAACTTATGACAAAGCATTCTTCTTTTTAGTTGACTTCCACATGAATTTTTGTCTGCTGAAGTGAAATTACAAGTTTACTGCCTTTATTTTCAAAACTATGGAATATCCTCACTGTATTAAGAGAAAGTGAGAAGATTTAGTGTGTGAAAATATTGATGGTAAAACTGGATGGCAGGTTTATCATGCTCAGTTGTAAAGGAAGACTAGTAAAAACTAAAACTTTCTACTCTAGATATAGAAGCACTGTCAAAGACATACAGAGTTCAAGGAAGGGGGAAATGTTGCCATTTCATACATTCAGATCACCAGCATTTTTCCAGCAAGAGCCACACACAGAATACATGCCTCTACAGTTCTCCCTTTGGTCTTGAGAGGGTGCTGAAGATACGCTGAGTTGGCAGATGGATGCTAGCTTGAAAATAATGATTTCTGACCAATTTATTATTCATTAGGAAGTCAGCAATAATTTCAATCCATATACAAAATAATTTTGTATCTCTTTTGAAACTGAGTATCTGCTAACAGTAAACAGAATAGTTTTTACTTTGGTATTTTAAAGCCAAAAGATTACAGGAACTGCTTTTCTCTAAGTTATTTAATGTAAATTATGTTTGTGTCTCAGTGCTGTAGTTGGGGAGAGAAGGACCTTAACAGAAGCCTGCATGACCCTTTGGAGCATATTTCTCGAGTACTATGTTTCAAATAAATAGTAGAATCTTCTCAAAAAGGCATTGTAGATGTGCAAAAAGTCAGTGTCAAATTTTTCTAAGTAGTTATTAACATGAATTATTGTTAAGTAGCAATTCTTTTGTTTTCAACATTTTTTTTTTTAATTTAAAAAATATAGTTTGGTTGTTGATTTATTGTAG
Seq C2 exon
GTATGGAATTTGGAAGATTGAAGCAAAGTACAAGAAGAATTTCATAACTTCAGCTGTTGCAAAATTTGAAGTTAAAGAATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001565:ENSGALT00000002379:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(31.6=100)
A:
NA
C2:
PF0183514=A2M_N=PD(25.3=82.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]