RnoINT0027437 @ rn6
Intron Retention
Gene
ENSRNOG00000018899 | C5
Description
complement C5 [Source:RGD Symbol;Acc:2237]
Coordinates
chr3:14210054-14212077:-
Coord C1 exon
chr3:14211986-14212077
Coord A exon
chr3:14210137-14211985
Coord C2 exon
chr3:14210054-14210136
Length
1849 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TAAATATTTCGCCTCCACAGGTA
3' ss Score
10.39
Exon sequences
Seq C1 exon
GATCCCGAAGGAACAGAAGTTGACATCGTAGAAGAAAATGATTATACTGGAATTATCTCTTTTCCTGACTTCAAGATTCCATCTAATCCCAA
Seq A exon
GTAAGTACAAAAAAAAAAAAAAAGTGTGTTATCGAGCAAATTTTCTCTAAAAAAGCATGTCTGGAACTTTTGGCTGGCAAGGACCGACACAATCAAGTGGAGCCACCTAGTGTCAGCAGAGCACCAGGGATGCGAATGTGAGGAATCTTTAGTGAGGCTGAGCCCACCACCATCCCAGATACTCAGGAGGCTGGCGCTGGAGGAGCCCAGCGCTTCATCCCCAGCCTGGGAAGCAGAGCTCTGTCTGAAACACACATGCACACACTTCCTATTTAGCTACCACGTGTCTGTATACAGCTACAATGTAACATAGAGGACCAGAAGCAGCAAGGTAGGTAGGGATGGAGACCCGGTCCTGCTTCTAAGGGAGAGAAGCGCAGCATGAATTAGACATGAGAATCTGCCAACAGCTGCTACAGAACCTCAGTCGTGCTCTGGTCATTTCCCCATGCTCTCTAAGAAGGAAATCGGTGTAGATGCATTACTCTAAAGCATAGGTATATTGTTCTAAATATAGTTATATTGTTCTAAAGTAATGTAGGTATTGAAACTGGGGAGCTTCAGAAAACTGGATAATTTTTAGATTCTGTGCTTTCTTGAAATTACTATGTACTCTACAGCACAGATTTGAGCTCCTCGCCATTACTGTTGTTATCTCAAAGTTCATCTTGTCCCGTGGCTATATGCATCACTATGAGAATATTAACTGGCACTAGTCACCTCCTTTAGAGCATGCTTCACTGTCTTCCAGGCTGAGCTGTACCTCATCCTCAGGGCCACACTTCGCCTTTGCTGACACCGTTTCTGGGTGTGGCCTACCCTCACCCCTGCCCCTTGGTATTGTCTTTGAGATACTCACCTCTGTGTCTTTTTATTTATTTTCTCGAGCTTTGCTTGGCTTTGGGGAAGGATCTCACTCTAGCTCAGGGTGGCCTGGAATTCATTCTTCATGACAAACCGACAAAGAGACACAAACCGACTCCAGCTGTAGTGGCAGTGCTGGGGTTATGAGTGGGATGCCTGCTGCCATGCTCTTGCCTTTGTGGTTTCCAGTTGACTGGAAACTCCAGAGAGCAGTCCCTCACCCGGACTGCTTGTTGCGTCTTGGCAGTCACAGGATGAGGTACTTGATGGAGATCCTTTAATCATTGCTGAGGATAACCTCAATACTCAGGGCCCAGCTGATAACAGCATGTTCTCACGTCACAAAGAGGGCCAAGTGACTTGGTCTCCTCAAGCCTGCTCAGGTGCAGAAACAGGAGGACTCCAACTCACGTGGACTCTTAACTCTGAAGACTGCGGCCCCTTCACGTCGTCATTCATTGTTATTACTCTATTGTTTGCTCTAGTGCTTGGTAAATACTTTGGAATGGAGTTTTTTTAACTAAGTCGTTTCATTTTTAGATAAACCACACCTCATCTCCAGTCATTACTCTATATGAGGTGTAAACTTTATCACCCATACAAGCACAGCCTCTGCGTTGCGAGTTTCTAGAGAGATTGCTGTGCATCTTCTGATCTATCACAGACTGTAATATCATGTTGCCGTCCTTAAGAATTAAGTGAATTCTGAAGTTATCGTCAGCCCTTTAAGTTAAACACAGTGACTGTATTAAGATAAAAATACCTGGAAAAATAATACAATATGAGAAAATCTAATTAATAAATAATTTTTGTTATTGAAAGAAAAACAGTCAACTCTTTCTGTTTGTTGTTTTGGAATAACCCGCAAAGTACTTACGTGCCTATGTACATTCTAACATCTTTAAAAATGAATTAGCTAAATTGCCTATGGCAAAATTAGAGATATTTAATGACATCTACGCCTTTAAATATTTCGCCTCCACAG
Seq C2 exon
GTATGGTGTATGGACAATTAAAGCTAAATATAAGAAGGATTTTACAACGACTGGAACTGCATACTTTGAAGTTAAAGAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018899:ENSRNOT00000025534:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(31.6=100)
A:
NA
C2:
PF0183514=A2M_N=PD(25.3=82.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]