GgaINT0126377 @ galGal4
Intron Retention
Gene
ENSGALG00000001565 | C5
Description
complement component 5 [Source:HGNC Symbol;Acc:HGNC:1331]
Coordinates
chr17:8327577-8328012:-
Coord C1 exon
chr17:8327800-8328012
Coord A exon
chr17:8327653-8327799
Coord C2 exon
chr17:8327577-8327652
Length
147 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
3' ss Seq
CTGCCTAATATACCCCTTAGGAA
3' ss Score
6.4
Exon sequences
Seq C1 exon
GACATCTTATGGGTGAAGTAATTGCCACAATCCTCAGTCCTGAAGGTCTTAGTATTCTTACGAATCTGCCGAAGGGCAGTGCAGAGGCAGAGCTCATGACTATTGCCCCAGTATTTTATGTGTTTCACTACTTGGAAGCATCGAACAACTGGCATATACTGGGTCCTGAAACCTTAACTTCAAGAACTGCAATGAGAAGGAAGATGAAAGAAG
Seq A exon
GTAGAAAAATATAACTTCTTCTCTTGCTTCAGAATTCTAGATCTTCATCAACTTTGCTGAATAAGAAAGGTAATGTATCTGAGTGAGCAGATATAATTTTAATAAGTCTCTTTTTGTAACTTTCTTTCTGCCTAATATACCCCTTAG
Seq C2 exon
GAATTGTAAGCGTCTTGTCATTCAGAAATTCTGACTTCTCATACAGCATGTGGAAAAATGGGAAAGCTAGCACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001565:ENSGALT00000002379:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=PU(0.4=1.4)
A:
NA
C2:
PF076789=A2M_comp=FE(9.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCACAATCCTCAGTCCTGA
R:
GCTTTCCCATTTTTCCACATGCT
Band lengths:
258-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]