GgaINT0126422 @ galGal3
Intron Retention
Gene
ENSGALG00000004565 | PHYHD1
Description
NA
Coordinates
chr17:5952218-5952647:+
Coord C1 exon
chr17:5952218-5952239
Coord A exon
chr17:5952240-5952518
Coord C2 exon
chr17:5952519-5952647
Length
279 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCCACTGCTGTTCATCACAGTGA
3' ss Score
6.36
Exon sequences
Seq C1 exon
CAACCCGGCATCGGCGGGGAAG
Seq A exon
GTGAGCTTTGTGTGTCTGTATTACAGCACAGGTAGTCCTTCAGGAGAGGATTGTGACCAGGTAAAGCAGGCACAGGGCTGCCCGGAGAGGTGGCGGTGCCCCATCCCTGCGGACACCCGAGATCAGAGCCGGGATGGGGCTGTGAGCGCTGACAGAGCTGTGTGTGTCCCTGTGCGCTGCGGGGAGTTGGGCCGGGCGGCCTTTAGTTGTTAGTGCCCCCACCTCGCAGTGCTGGCCCCAGGCACGCTCAGACCCCGACCCCACTGCTGTTCATCACAG
Seq C2 exon
TGACACCACACCAGGACGCCACGTTCCTGCACACGGAGCCCCTGGGCCGGGTCCTGGGCTTCTGGATTGCACTGGAGGACGCCACGCAGGAGAACGGCTGCCTGTGGTTCATTCCCGGCTCCCACACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004565:ENSGALT00000007266:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.045
Domain overlap (PFAM):
C1:
PF057218=PhyH=FE(2.8=100)
A:
NA
C2:
PF057218=PhyH=FE(17.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]