DreINT0113734 @ danRer10
Intron Retention
Gene
ENSDARG00000029905 | phyhd1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-041114-159]
Coordinates
chr21:4351673-4353657:+
Coord C1 exon
chr21:4351673-4351694
Coord A exon
chr21:4351695-4353528
Coord C2 exon
chr21:4353529-4353657
Length
1834 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CCTCTGAACCTTGTCTCTAGTGA
3' ss Score
6.22
Exon sequences
Seq C1 exon
CAACCCGGGATTGGTGGAGAAG
Seq A exon
GTAAGACCCTCCCATATCTTTAACCAATAGAAAATCAGTTTGAAAGCTGACCTCGTTTTCCATTTGTATTGGATTCCATGTCATTTGTGTACCTTTTTATATATCAGTAATCATAAAAAAGAATTATAATAATAGGTGGCTCAGTGGTTAGCACTGTGGCCTCACAGCAAGACGGTCGCTGGTTCGAGTCCTGGCTGAGCTAGTTGGCGTTTCTGTGTGGAGTTTGCATGTTCTCCCCATGTCTCCTCCGTTTTCCCTAACAGTCCAAACACATGTGCTACAGGTGAATTAGATGAACTAAATTGGCCTAAATTGGTGTATGAGTGTGTGTGTGTGTGAATGAGAATGTATGGGTGTTTCCCATTACTGGGTTGCAGCTGGAAGGGTATGCGCTGCATAAAACATATGCCGGGATAGTTGTTGGTTCATTCCACTGTGGCGATCCCTGATAAATAAGGGACTAAGTTGAAGGAGAATTAATGAATTAAAGAGCCCATATTATACATGAAATAGGGTCATATCTTGGTTGTAAGGGTCTCCAACAACAGTCTAATATGCATGCAAGGTCAAAAAACACTTTCATGGTCTTATAATCTGCATTTATTTTTACCTAATTATCCCAGCGACTCCTGTATGAATCATCCAGGGATTCATTTGTTCCCAAACCCCTCCTTAGCGCGAAGCTAATCTGCGCTGATTGGACCGATGACAGCCTGTTGCGATTGGTCGACTGCCTTCAGTCAGAGAGTGAAATGCCCAATAGCTAATCAGCAATATAAAAGTAATCACAGTTCATACACGCTCGATAGTGTAGGCGTGGATTTTAGCTGCCAGTGGGTCAATGTAAATACAGTCGATGGACTTGAAAATTCAGACGACTATTTTATTGAGCAAAAACTCCAAAAACTGTCGAGGAGATCTCATAGCTTGTCTCACTCTGTTCTTTTCACAGACACAGACACGCACGCACACACACACATTGCCCTCGTCCTTGCGCGCGCGCGCGCACACACACACACACACACACACAAAAACACACACACACCTCCGGACGACAACGCACACACACTACTCCTCCACGGAGCTCCATAAACAAAGTAGCACGCGTCACGTTTTTAACGTGACTTTGCACGCGATAAGAGAATATAGCCAGTTAACCTGATACAGTACACGCGGTTACAAGTAACAAATCACAACTAAATACATTTGCAAGCTAGAGTCAACGAGGCAACAACTTTAATCGCATGTACTTACACTTGAGAAATGGAGGAAGAAACTAATCCTGACGTCCATCAGTAAGTTACTCTTTACTGATCCTTCCTTTAACAAATGCAGATGAAGTATTCTTTGTAGCATGTAGTTTCCAACTGCTTGGCTATAATGCTGATGTTTCATCTTTGGGTAGACCCTCGATAATATCCATCTGCAGTGTGACTTCAATCGACCAGCATGTTTGTGTTCGTGTGTTTGTGGGTGTGTGTGTCTGGGTTTCTGTGTCAGAGGGCTTGGCCTCAGGTTTGAAATCTCCCGGGTTTGCGCGTGCACGTGAATAACTTGGTTTCGTTCGTACGTCATGGCGAAACACCTAATGAATCGGTATCAAGGCGACTCGTTTGAAGCACTATGAGTCGACTCTTTTATAGATGAATCAACCGTTTTAAACACTGTACTCTTACAGATTTAAGCCTTAGCTGGATACTTCACTTCACTTAGAGCTGTTTTACACACTACATGGAGGGGAATTTTCAAAAACCCATAATATGGGCTCTTTAATAATAATAATCAAAAACTGCAAAAAATGAATATAAATCTGACCTCTGAACCTTGTCTCTAG
Seq C2 exon
TGACTCCTCACCAGGACGCCACTTTCCTGTACACACAGCCTCTGGGGCGAGTCATGGGCGTCTGGGTTGCGCTGGAGGACGCCATGCAGGAGAACGGCTGTCTGTGGTTCATCCCAGGATCACACAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029905:ENSDART00000147187:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF057218=PhyH=FE(2.8=100)
A:
NA
C2:
PF057218=PhyH=PD(25.3=90.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]