HsaINT1026855 @ hg38
Intron Retention
Gene
ENSG00000175287 | PHYHD1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23396]
Coordinates
chr9:128937757-128940497:+
Coord C1 exon
chr9:128937757-128937778
Coord A exon
chr9:128937779-128940368
Coord C2 exon
chr9:128940369-128940497
Length
2590 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCCCCCGTGGGCCTGCTTAGTCT
3' ss Score
3.41
Exon sequences
Seq C1 exon
CAACCTCACTTTGGCGGTGAAG
Seq A exon
GTGAGCTGAGAGCTGTGGGCCCCTGAAAAGGCCATGGGTGGGACATCTAAGACAGCAATGGTTCTCAGATCTTCAGAAGGAGGGAAAGCGCTTGCTCCTGTCTGTTGTAGGAGCCTGGCCCGGAGAGGAGGAGCCACCTTCCATTCCTTCCCCTGATAGTGGATTGGTAGGGAAACCTTGCGTCCTTGGCATAGTGGGTCCTGAGCCTGCCAGCAACCCCAGCTGGTTAAAAATATAGATTTCCTAGGACAGGCGTGGTGGCTCATGCCTGTAATCCCAGCAATTTGGAAGGCAGAGGCGAGCGGATCACCTGAGGTCAGGAATTCGAGACCAGCCTGGCCAACATGCTGAAGCCCCATCTCTACTAAAAATACAAAAATTTTGGTGGGTGTAGTATCGCACACCCGTAGTCCTAGCTACTCAGGCGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCAAGATCACACCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCTGTCTCAAAACCAAACAAACAAAAAAACCAAACCAAACCAAGCAAACAAAAAAAACAGATTCCTGGGCCCTAGTCCCTGAGATCTTGAGCCAGTAGGGCTGCATGGGCCTGGGAATCTGTTTTTTGGGTTTTTTTTTGAGACAGAGTTTCATTCTTGTCACCCAAGGTGGAGTACAATGGCACAATTTCGGCTCACTACAACTTCCGCCTCTCCGGTCCAAGTGATTCTCCTGCCTCAGCTTCCCAAGTAGCTGGGATTACAGGTGCCTGCCACCACGCCCAGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTCCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGGATGAGCCACCGCGCCCGGCCCTGGAATCTGTATTTTTAACAAGTTTCCTGGAGGACGAATTCAGCATAGAAATTGCTGATCTAGTTCCACACCCTACACCATGCAGCCACCCTTTACAGCCTCCCTAGTAGGTGATTATCTACTTCTGCTCAAATACCTCTGGTGACAGGGAGCTCATCCCCTCCCAGGAAGCCCTTTCCTTCCTTGCATGAGCCCAAGTCAGCCTCCTTGTGACCACCTTCTTCCACCATTCAGCCTGTACGAAGTTCCCCAAAGGGATGACCATCCCCACCCTTAGCCTGAGTCCAGTTCCCCAAAGGGATGACCATCCCCACTCTCTGCCTGAGTCCAGTTCTCCCAGTTCCTTCCACCATTCCTCTCCCAAATGTTTCAAAGCCCCTTCCATTTCAAATGTTCCTTTGGAGGTCTGTCTTAAAGTTCAGTATTCAGAAAACACGCAGTTGCCCGGGAAGGAAGGAGGTGAGACAGCAACCTGTTTGTTCTGTTGCTGAGGACCATGTTCCTTTGTTCGGTGGTTCCGCATCCTAACTGTGCCCCAGCATCGTGTGGGGAGGTTTTTAAAAATGTGGATGCTGGCCAGGAGTGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGGGGTAGATCACCTAAGGTCAGGAGTTTGAGACCAGCCTGGCTAACATGGTGAAACCCCATCTCTACTAAAAATATGAAAATTAGCTGGGCGTGGTGTCAGGCACCTGTAATCCCAGCTACTAGGGAGGCTGAAGCAGGAGAATCACTTGAATCCGGGAGGCGGAGGTTGCAGTGAGCCAAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCCAGACTCCGTCTCAAAAAAAAAAAAAATAATAATAATAATAAAGAAATGTGGATGCCTGATCATAGCATCTCCCTGCTTCGCACCCAACTTCCCAATTTTTTTTTTTGAGAGGGAGTCTTGCTCTGTCACCCAGACTGGAGTGAGGTGGCACAGTCTCGGCTCACTGCAAGTTCTGCCTCCCGAGTTCAAGCAATTCTTCTGTCTCAGCCTCCCAAGTAGCTGGGATTACAGGCGCCTGCCACCACACATGGCTAATTTTTGTGTTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAATTCCTGACCTCAGGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGAGATTATAGGTGTGAGCCACCGCGCCAAGCCCCAACCTCCCAAACTTAGGCCACTGGGTGAACCATCTGGTGGCTGGGGGCCGCTTGTCCCTGGTTAAGAAGGGTGGCTTGAGTTATCTCACTGGAATTAAACAGTAGTGCTACTTTATATCAAGCAGTTACATTGTTGGGCCCTAAGCACTTTTCATACATCATCTCATAGAATCCTCCAGCACCCTGTGAGGTAGGTTGTTGTTGGAGCCACTTCACGGTTTAGGAAATTGAGGCTTTGAGAGGTGAAATCGCTTGCCTTAGAGTCCTGGGCCAGGAAGTGATGAGATTCTAACTGATCATGGGAAGGCTGGCCCTGGAGAGCACCCAGAGGACTGAGGAATAGGTAATGAGGCCAAGGTGAGGTGGAAACAGGCAAAAGGATGAGCTCCTCACCCCCCGTGGGCCTGCTTAG
Seq C2 exon
TCTCCCCTCATCAGGACGCCTCCTTCCTGTACACGGAGCCCCTGGGCCGGGTGCTGGGCGTGTGGATCGCAGTGGAGGATGCCACGCTGGAGAACGGCTGTCTCTGGTTCATCCCTGGCTCCCACACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175287:ENST00000372592:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.132 A=NA C2=0.067
Domain overlap (PFAM):
C1:
PF057218=PhyH=PD(7.5=68.8)
A:
NA
C2:
PF057218=PhyH=PD(13.3=18.6)
Main Inclusion Isoform:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains