RnoINT0110773 @ rn6
Intron Retention
Gene
ENSRNOG00000016794 | Phyhd1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:RGD Symbol;Acc:1310377]
Coordinates
chr3:8841881-8844081:+
Coord C1 exon
chr3:8841881-8841902
Coord A exon
chr3:8841903-8843952
Coord C2 exon
chr3:8843953-8844081
Length
2050 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCTGGGTGGGTCTCCTACAGTCT
3' ss Score
5.27
Exon sequences
Seq C1 exon
CAACCTCACTTTGGCGGCGAAG
Seq A exon
GTGAGCTGAGATGGGGCTGCTGTGGGGGCCATCAAAGGCCTCAGGCTGGAGATGGGGCGCCACTGGCCATAGGGTGTTTGAAGGGAGAAAAGGCTCTTCCCTCAGGGTCTGTGGGATGGGCAAGAGCCTGGCCAGGGAGGAGCAGCCATCTTCCATCCCTTCCAGTAGACTGGGGAAGTGTCCCTAGAGCCCTTGGCACAGTGATCCTGATTTCAATGGCAAACTTAGCTGGCTGAAACCAGAACCCTCAGTCCTCCTCCCCGAGATATTTTTGTTTTCAGTTTTGTTCGAGACAGGTTTCTCTGAGGCCAGCCTGGTCTACAGAGTGAATTCCAGGACATCCAGGGCTACACAGAGTAATCTTGTCTTGAAAAAACAGAAAAGAAAAAAACAAAAACCAACCAACCCAACAGGAACAAACAAGCCAACGTTACTTCTTCCTGTGGTGGTCCACTCCTTTCACCCAACACTACAGCACTCAAGAGCCAGAGAGAGAGAGATTTTTAATAACACTGTTTCCCAAATCATTCAGCGTGTGATTTGATGAAGGGAAGAGTTTAGGGACTCCATGGTGGGTGGCGTTCTGCTCAGACACTTCTGCAGCTGTGGAAGACTAGCTCTGGCCCCATTCACATGCACCCCTTTGCTTTGTACAAGCTCAAGTCTGACTCCTTGTGACCAGTCTCTCATGGCCCTGTGCCTGCTCTGCCTAAATCCAGCGTCCAGATACCTTGGCCATTTTTTCCCCTCAGAGACTTTGAGGACCCCCTAATTGGCCACCCTCCTCAGGATAACAAAGTCCCTATGGCTGCTTAGAGTACATAGTTACCCCAGGGGGATGAAGGTGACACTTGTTCCTGTAGACTGAACTCCTCTCTAGGGCCATCTCCATCCCACCTGTGCCAGGCGTTATCCCAGGGGCTTTAAACAGTGGATGCAAATGGACAGGGGCTGTGTCTCCTGACAGTAAGAGAGGGTACTAGTGCCTGCGACAGCCTGTAATCCCAGCAGCTCAGAAGGACTGAGCCACTACCGTGGGCAACTTCCTCAGAAGACCCTGTCACAAAGCAAAACAGAAGGAGATGTAGTGACTTGGTCATTCATGGTTGGTGCCCTGCCCTGCTCATGTCTCCAGCATATGTATCCTGCTGGTGGTTCACATCTGCTTACCCCTGGCTAAGAACGGAAGCTTTACGAGTGCAGTGGTGGTGTAGGCATTTAATCCCACCACTCAGGAGACAGAGGCAGGAGGATTTCTGAGATCCGAGCAGACTGGTCTTTGGAGTGAGTTCCAGGGCAGCCAGAACCACACAGAGAAAGAAACCCTGTCTCAAAAAACTAAACAAGAATGGTGGCTTCCAAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGACAAAAATAACAAAAAGACCAAGGGGCTGTGGATTTAGCTCAGTGATAGAGCATTTGCCTAGCAAGCGCCAAGTCCCTGGGTTCGGTCCTCAGCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCGGCTTCCATGATGTGGCTGAGGTTAAACATAGCTACTCTTTTTTTTCTTTTATCATTACGAGGTTGGCCTTGTGCTGAGCAACTTTTAAAAAGATTTATATATTTTATGTACACACATGTTCTGTCTGCATGAACTTCTGCACACCAGAGGGGAGCATCAGATCCCATCACAGATGTTTGCGAGCCACCATGTGGTCTCTGGGAAGTGACCTCAGGACCTCTGAGCAGCCAGTGCCTGTACACATGAAGCCATCTCTCCCGCTGTCTGTCCTGTACTAGATCATTTTAGTAGGTCGTCCTAAGAGCCTCTAGCAGACCTTGGAAGCAGGTTAACCAGTCTACAGTTGAAGAAATGCTTAGAGTTTGTAGGCTAGGCAGTAGTGAGACTCTTAACTGGAGATGGATAGGCTAACCCTGGAAGGATTATGGAATGAGAACCTGGCCAGGATAAGGTGAGGCATGGCCAAAGGCCTTGTACCTTACTCCTGGGTGGGTCTCCTACAG
Seq C2 exon
TCTCCCCTCACCAGGACGCTACCTTCCTGTACACGGAGCCTCTAGGCCGAGTGCTGGGCCTGTGGATTGCAACGGAGGATGCCATGCTGGAGAACGGTTGCCTCTGGTTCATCCCTGGCTCCCACACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016794:ENSRNOT00000022552:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF057218=PhyH=FE(2.7=100),PF063756=BLVR=FE(11.1=100)
A:
NA
C2:
PF057218=PhyH=FE(16.4=100),PF063756=BLVR=PD(14.3=20.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]