GgaINT0126465 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:7650406-7651558:+
Coord C1 exon
chr17:7650406-7650486
Coord A exon
chr17:7650487-7651382
Coord C2 exon
chr17:7651383-7651558
Length
896 bp
Sequences
Splice sites
5' ss Seq
TGGGTGTGT
5' ss Score
3.3
3' ss Seq
TTTGTTTCTCTTGTCTTAAGCTG
3' ss Score
7.13
Exon sequences
Seq C1 exon
GCTATTCCCTGGTAACGCACATTCCTGCTGGAGCAAGGGATATCCAGATAGTGGAACGGAAAAAATCTGCAGATGTTCTGG
Seq A exon
GTGTGTATAACCTCTTGGTACTTCCCTAGAATGCACGTGTGCTAGCTAATATCTTTTTCAGTGTCTGTATGAATGTAGCTTTATTGCAGGCATGAGCCAAATCCATTGGTGTAAATCACAGCCGTGCATTTCTCCTCACTTCAGCCTGAGCACCTGGGCTGTGTATTCCTGCCTTCTGATTTGCTTTAATGCAGAACTGCTGGTCGCTATCATTGCTGCTGCGGTGCAGTTTGAATAGGCTGGTGCCAGGTGACAATCAAGTGGCCTCACCTCTCCTGTGATGCCCTCAATCTCTCCCAGCTTGGGTGGTGTGCAATGGCCACCTGACAGCAGCACCATGCAGATGGCTCACGGGTTGATCTCAGAGTTGGAGAGGGCAGAGCTGTTCTGTGGGGTTGTATGAGAACCTGGGCTTGCCCAATGGAGGCACATGTTTGCTGTCGTGCTCTGGTGCTGTCCCAGAGGCTCATGGCCACGCACAAGAGGGTTTGAGCAAAAAGGCTTTGTATATCCTGGATAGCTCTGGATGAGCCTTGGGACAGAGCTGGGTGAGATGTGGTCAGCTCAGGGCTCCTGGAAAGGGATCTCCATCTGTAGCCTTTGGCAGTCTGTTTGTTGTCTGCAGAGCTGTTCTTGTTTTGTGTTTATGCTGTGCTGGTGCTGTCAGCTGACGTGCCTGGGAGCTTACAGTGTAGAGGAAAGCATAGCCCAGGGTTCTGGGCATGTACCTGCAGGATGCATGTTGGGAACACAGCATCTGACAAATGCATTACAGTGTAGGAGAAAACACGTCTCATTACTATGACACTCCAATAACTTTATAGTCTGAGCAAACAAATGGCAACGTTACATCTCGCCTTTAGAACTGATTTTTGTTTTGTTTCTCTTGTCTTAAG
Seq C2 exon
CTGTGGCTGATGAAGCTGGGTACTATTTCTTCAACGGGAATTACAAAGTTGACAGCCCAAAGAACTTCAACATTGCAGGCACGGTGTTCAAGTACCGCCGGCCCATGGATGTCTATGAGACTGGCATAGAGTATATTGTTGCACAAGGACCAACAAACCAAGGATTGAACATAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002955:ENSGALT00000004669:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=FE(22.9=100)
A:
NA
C2:
PF059869=ADAM_spacer1=FE(49.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATTCCCTGGTAACGCACA
R:
TATGTTCAATCCTTGGTTTGTTGGT
Band lengths:
254-1150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]