GgaINT0126470 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:7658616-7659811:+
Coord C1 exon
chr17:7658616-7658742
Coord A exon
chr17:7658743-7659597
Coord C2 exon
chr17:7659598-7659811
Length
855 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
TTTCTCTGTCTCTCCTGCAGGTG
3' ss Score
14.77
Exon sequences
Seq C1 exon
GAGTGATGTCCACGTATGCTATGTGCGTCCGCTATGATGGGATCGAAGTGGACGATACGTACTGTGATGCCATGACCCGTCCTGAGCCCGTCCATGAGTTCTGTGCTGGGAGAGAGTGCCAGCCAAG
Seq A exon
GTATGAGACTCATCCCTCTGCCCTCTTCGGTGTCCTAAATGTGACTGAGGTTTGCTTGTGGTCAGCGTGAAGTGTGAGATGTTGGCAGGAGTGGAATGTGTGCTGGAATCCCTTCTGATGCAGCTTTTTATCCAAAAAGGCATGATTTGGATTGCAGTCTTGAGTGGAAATGTGTGACTCGTGCAGGCCTCAGTACAGCAGAGATGCCCTCGTTGTAGGGAGCAGCTGTGGTTGGTGTCTGTTGAAGGGGAGGGCTGTGACAGTGTCAGACCATGAGCAGTGCAAAGAGAGAAGGAGAACAGCCTGGTGCATGCTCTGCAGTGATATCATCTGCAGGGCAAAGCAAGACGGGGTGATACCAGGGGATGGGTATGGCCCTGTGGAAGTGCAGAGTGCTTGTTTTCCACCTTGGTTAATGGCAGAGTGTGGCTAACCGTGCTGGGGAGGGAAGGGGGGATGTATGTACCTTTTGGGGTGTAAGATCTCACTGAGCTCTGCATATAAAGGCTGAAAGCCAGATCAGGTGGCAGTGTAGGCAAGAAAAACACAGGGAGGGGATGGTGCTGCTCCCCTGTCCTGGAAACACTATGGGGTGTTCACTCTCCGTTTGCATTGACCTAATTATTTCCTAGCATTCAGGTCAGTAGTAGGGCTGGTCCCATTCCGTGAGCCTGAGCACTGAGAGGAGCTGCCCTGTGTCTGCTCAGGGAATGCAGCAGGATAGGGGGCAACAAAGGAGGCACTTCCAAATGCGCTGTGCTGAGCCCTTCCCGGGGGCTGATTGGAGCACCCCAAAGGCTGCCTGCACCCCTCCGGCTTCCTGCTGACCGCATCTTTTCTCTGTCTCTCCTGCAG
Seq C2 exon
GTGGGAGACGAGCAGCTGGAGCGAGTGCTCCCGTACCTGCGGCGAGGGCTACCAGTTCCGCATCGTGCGCTGCTGGAAGATGATCTCTCCAGGCTTTGACAGCTCCGTCTACAGCGACCTCTGTGAGTCAGCTGACATCACCCGGCCCGATGAACGCAAAGTGTGCAAGAACCCGGCCTGTGGGCCACAGTGGGAGATGTCTGAGTGGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002955:ENSGALT00000004669:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009014=TSP_1=WD(100=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCACGTATGCTATGTGCG
R:
TCTGACCACTCAGACATCTCCC
Band lengths:
334-1189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]