BtaINT0014342 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007492 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr11:104500134-104500859:+
Coord C1 exon
chr11:104500134-104500260
Coord A exon
chr11:104500261-104500645
Coord C2 exon
chr11:104500646-104500859
Length
385 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
GCCGTGCCCTCCCGAGGCAGGTG
3' ss Score
4.92
Exon sequences
Seq C1 exon
GGGTCCTGTCGACCTACGCCATGTGCGTCCGCTATGACGGCATCGAGGTGGACGACAGCTACTGCGATGCCCTGACCCGGCCCGAGCCTGTCCAGGAGTTCTGCGCAGGCAGGGAGTGCCAGCCCAG
Seq A exon
GTACCTGCCACCAGGCCCCGGACAGGGTGTGTGCTGGGGGGCGGGTGAGCTGGGGCTCTGCCATGCCGTGTCCAGGGGGCTGCTCCGTTCTGGGGTCTCTGCTCCGTCCCGGGGTCTCTGCTCCGTCCTGGGGTCTCTGCTCCATCCTGGGGTCTCCGGTCCATCCAGGCCTCTGCTCCCTATGTATCTGCTCCTTTCTGAGAAGCTGGGTGTGCAGTCATGGGGGTCCCCTCTTCCCTTCAGTGGGGCTGGGCGCCCAGGACACTGAGGCAGGACCCCAAGTTGGAGTTAGCAGGAGCGGAAGGTGCTCTGGCTGGAGGGAACCGCATGGGGTCGCAGCTGGGAGTGGGTGGGGGTCACTGAAGGCCGTGCCCTCCCGAGGCAG
Seq C2 exon
GTGGGAGACCAGCAGCTGGAGCGAGTGCTCACGCACCTGCGGTGAGGGCTACCAGTTCCGCATCGTGCGCTGCTGGAAGATGCTCTCGCCAGGCTTCGACAGCTCTGTCTACAGCGACCTGTGTGAGGCTGCCGAGGCCGTGCGGCCCGAAGAGCGCAAGACCTGCCGGGGCCCGGCCTGCGGGCCGCAGTGGGAGATGTCCCAGTGGTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007492:ENSBTAT00000009855:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009014=TSP_1=WD(100=62.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCGACCTACGCCATGTG
R:
TCAGACCACTGGGACATCTCC
Band lengths:
335-720
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development