RnoINT0013624 @ rn6
Intron Retention
Gene
ENSRNOG00000027742 | Adamtsl2
Description
ADAMTS-like 2 [Source:RGD Symbol;Acc:1305459]
Coordinates
chr3:5647725-5649069:+
Coord C1 exon
chr3:5647725-5647851
Coord A exon
chr3:5647852-5648855
Coord C2 exon
chr3:5648856-5649069
Length
1004 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
TGGCTTCGCTCCTGAGGCAGGTG
3' ss Score
1.95
Exon sequences
Seq C1 exon
GAGTCATGTCTGCCTATGCCATGTGCGTTCGCTACGATGGCGTTGAAGTGGATGACAGCTACTGCGATGCCCTGACCCGTCCTGAGCCCGTCCATGAATTCTGCGCTGGGAGGGAGTGCCAGCCCAG
Seq A exon
GTACCTGTCCTGGAGCACCTAGCCGGGTGTCAGGAGGTGTGCGTGTGTGCATGTGCGTGTGTGTGTGTGTGTGTGTGTATCTGTGCGCCTGCGTGTGTGTGCACGCGCGTGCATGCGTGTGTGTGTGCGAGTGTGCGTGTGTGTGTGCGTGTGTGTGTGTGTGTGCGTGTGTGTGCATGTGTGTGCGTGTGTGTCTGTATGTGTGTGTATGTGTGTATGTGTGTGTATGTGTATGTGTGTGCGTGCATGCGTGTGTGTGCGTGCATGCGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGCACTCACTCTAGGGCTCTGCTGTGAGCTTTGGGGCTGTATGTGGAGGTCAGAGCAGAACACATGGGACGGTCACTAAACATTCCACCATAGGTTTTCTTCCGCATTACTCTCTGTACTAGAAGGCTATCTTTGCACAGAGGCTGGCCTGTGCAAGTAGTGTCTCTGTAAGCTAAGGAGGATTACTCCCGGGAATATCAGTAGAGCCCCATCGTTCTAGCCCCATGGTTCTTGTCTTCAAGGCAGAGGCAGGGCTTGGGTGTCCCTTCCAGGGACCGTGTGCTTCTTGCTCCCCGGCATGGCCACACTCCCTCTTTTCTTCTGGCTGCTATATCTGGGTATTTGTCCCTTTATGTGGATTTAGATTTAGATTCTTCTGGCAGGGCAAGCAAGGCCTGGGGCTCTGGGACACTGGAATATGAACACAAAGGGTGTCAAACATGAAAGACACGAAGCAGGGGACAGAAGGAACAAAGGAAGAAGGCCTGGGGGGCGGTGAGCATAGGTGAAGGTAGTCAGGTCCCCAAAGCTATGGACGCTTGCAGGACGCTCATTCACCATTCCACTTAGCAGCGTCTAACACAGGGTTAACGTGGGCACAGTCCACACTGGCGGGTGTCACCTCCTCCGGGCCTGGGTTGGCCCGTGTGGTTTGGAGCCACTGAGGGCTGGCTTCGCTCCTGAGGCAG
Seq C2 exon
GTGGGAGACCAGCAGCTGGAGTGAGTGCTCACGCACCTGCGGTGAGGGCCATCAGTTCCGCATCGTGCGCTGCTGGAAGATGCTGTCTCCTGGCTTTGACAGCTCCGTGTACAGTGACCTCTGTGAAGCCACAGAGGCTGTGCGGCCGGAGGAACGCAAGACATGCCGCAACCCAGCCTGTGGGCCACAGTGGGAGATGTCTGAGTGGTCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027742:ENSRNOT00000036995:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009014=TSP_1=WD(100=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCTGCCTATGCCATGTGC
R:
TCCGACCACTCAGACATCTCC
Band lengths:
335-1339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]