GgaINT0126471 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:7659598-7661028:+
Coord C1 exon
chr17:7659598-7659811
Coord A exon
chr17:7659812-7660872
Coord C2 exon
chr17:7660873-7661028
Length
1061 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GTCCCCTCTGTCCCCACCAGTGC
3' ss Score
8.28
Exon sequences
Seq C1 exon
GTGGGAGACGAGCAGCTGGAGCGAGTGCTCCCGTACCTGCGGCGAGGGCTACCAGTTCCGCATCGTGCGCTGCTGGAAGATGATCTCTCCAGGCTTTGACAGCTCCGTCTACAGCGACCTCTGTGAGTCAGCTGACATCACCCGGCCCGATGAACGCAAAGTGTGCAAGAACCCGGCCTGTGGGCCACAGTGGGAGATGTCTGAGTGGTCAGAG
Seq A exon
GTGAGTTCTGGGGCTTTGGAATGACCTGTGGCCATTGGAGGGGAACCTCTGAGGACCTTGGCAGTGATAGGTGTCTTTGGACTGATGTGCTAATAACATATATACTCTTTTTTTTTTCCCCTTATAATGGGATATCCCCTCCAGGATGGGGCAGCCACCAGTATCAATTGCTTTTTTTTTGTTAATTCAGCATGCACAGTGCTGGTGTTGCCCCTGAGACTGGTGCGCATTGCCCCTTTGGTACACAGAGAAGTGGGAATGGGGTTGACATGGGAATGGTGTTGCCATCAGCGCCTTTTCCTCACCTCCCATTGCACCACACCACAAAGAGAATGAAACCCATGCAGAATGAATGGAACCCCTTCCTCCCAGAGCCTTCCAAAGCCATTCTTGGTCATCGTTCCCCATCTCCTTCCCTCCTCAGGCTGGGTGAGCCGTTACCATCACACTGTTGATGGAGAGTTGCTCCTTTCTGCTCTTGCAGGATGTTTTGACTTTCCCAATCCGGTAGAGCTAAGCTCCCTGCACACGTGCTCTCGCAGTATTTTGGCTGGCAGAGAGAACCAGAGCTGCTTACTTTACCAAAACCCCTCTACACCTCCAGCATGTGTCAGAGACAGATTGCTTGAGACAACCCTGGAGCCGCTCGCTCTGAGCCAGCAGCAGAGCTAATCTAATTTGGATCGCATCAGAAGCCGGGTGCCAAGTTGGCTTGGGAAGTAAGCCCCCAAAAAAGCACGTTTTGGAGATCTGAGGATTAACATATCAGCACAGTGCGTCTGAGCGCTGTGCTGTTGACACTCTTCCCTGCTTTACAGCATGCACAGAGCAAACGTGTGCACGGGGGACTGCAGAAACTCAACCCTGCTTCTAAATAATGTCACTGGGCTGCGCGGTGCCAAATTTATCCACAGGATAAGAAAAAAAATCCCAGCTCTGTGGTTTCATGGTGCATGTGTAGAGAGTTCCAGGCTGAAAATGCAAAACAAAAAAACCCTCAAAAGCATCTCCCAGCTCCCATAGCCCATACCCATCCCGTGTGTCCCCTCTGTCCCCACCAG
Seq C2 exon
TGCTCTGCGCGGTGCGGTGAGCGCAGCGTGGTGACGCGGGACATCCGCTGCTCGGAGGAGGAGAAGCTGTGTGATGCCAGCGCCCGGCCCCTGGCTGAGAAGAACTGCACCGGGCCTCCCTGTGACCGCCAGTGGACCGTGTCTGACTGGGGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002955:ENSGALT00000004669:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=83.3)
A:
NA
C2:
PF0009014=TSP_1=PU(13.6=15.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGTGCTCCCGTACCT
R:
AGTCAGACACGGTCCACTGG
Band lengths:
342-1403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]