BtaINT0014343 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007492 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr11:104500646-104501212:+
Coord C1 exon
chr11:104500646-104500859
Coord A exon
chr11:104500860-104501056
Coord C2 exon
chr11:104501057-104501212
Length
197 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCAC
5' ss Score
2.13
3' ss Seq
CTCCCGCCGTCTCCCCGCAGTGC
3' ss Score
11.71
Exon sequences
Seq C1 exon
GTGGGAGACCAGCAGCTGGAGCGAGTGCTCACGCACCTGCGGTGAGGGCTACCAGTTCCGCATCGTGCGCTGCTGGAAGATGCTCTCGCCAGGCTTCGACAGCTCTGTCTACAGCGACCTGTGTGAGGCTGCCGAGGCCGTGCGGCCCGAAGAGCGCAAGACCTGCCGGGGCCCGGCCTGCGGGCCGCAGTGGGAGATGTCCCAGTGGTCTGAG
Seq A exon
GTGCACAGGCCAGGGCGGGTGGGGGCCGAGCGGGCCGGGTGGGGGCCGAGCGGGCCGGGTGGGGGCCAGGCTGTGTGGGGGCCGTGGGCCGTGGGCCGTGGCCTGGGTGGGGGCCAGGCGAGCCGGGTGAGAGCTGGGCAGGGGTCTGCATGCAGCTAGGGCCGCTGCGAGCCCGCCCTCCCGCCGTCTCCCCGCAG
Seq C2 exon
TGCACGGCCAAGTGTGGGGAGCGAAGCGTGGTGACGCGGGACATCCGCTGCTCGGAGGACGAGAAGCTGTGTGACCCCAACACCAGGCCCGTGGGGGAGAAGGACTGCACAGGGCCCCCCTGCGACCGCCAGTGGACTGTCTCCGACTGGGGGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007492:ENSBTAT00000009855:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=62.5)
A:
NA
C2:
PF0009014=TSP_1=PU(14.5=15.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCAGTTCCGCATCGTGC
R:
GTTGGGGTCACACAGCTTCTC
Band lengths:
247-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development