HsaINT1002812 @ hg38
Intron Retention
Gene
ENSG00000197859 | ADAMTSL2
Description
ADAMTS like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr9:133568273-133568758:+
Coord C1 exon
chr9:133568273-133568486
Coord A exon
chr9:133568487-133568602
Coord C2 exon
chr9:133568603-133568758
Length
116 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CCCTCCCCCTGCCGCCCCAGTGC
3' ss Score
7.43
Exon sequences
Seq C1 exon
GTGGGAGACGAGCAGCTGGAGCGAGTGTTCGCGCACCTGCGGAGAGGGCTACCAGTTCCGCGTCGTGCGCTGCTGGAAGATGCTCTCGCCCGGCTTCGACAGCTCCGTGTACAGCGACCTGTGCGAGGCAGCCGAGGCCGTGCGGCCCGAGGAACGCAAGACCTGCCGGAACCCCGCCTGCGGGCCCCAGTGGGAGATGTCGGAGTGGTCCGAG
Seq A exon
GTGAGTGCCTGCGGGAGCAAGCCGGGGGTCGGGAAGAGCTGGGGAGCTGGGCTTGGGAGATGGAGGTGGCTACACCTGTGTCACACCCCCCCTGCCCCCTCCCCCTGCCGCCCCAG
Seq C2 exon
TGCACTGCCAAGTGTGGGGAGCGCAGTGTGGTGACCAGGGACATCCGCTGCTCGGAGGATGAGAAGCTGTGTGACCCCAACACCAGGCCTGTAGGGGAGAAGAACTGCACGGGCCCGCCCTGTGACCGGCAGTGGACCGTCTCCGACTGGGGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197859:ENST00000354484:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=83.3)
A:
NA
C2:
PF0009014=TSP_1=PU(14.5=15.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGGAAGATGCTCTCGC
R:
GTTCTTCTCCCCTACAGGCCT
Band lengths:
250-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains