GgaINT1005525 @ galGal4
Intron Retention
Gene
ENSGALG00000002955 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr17:6986504-6987934:+
Coord C1 exon
chr17:6986504-6986717
Coord A exon
chr17:6986718-6987778
Coord C2 exon
chr17:6987779-6987934
Length
1061 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GTCCCCTCTGTCCCCACCAGTGC
3' ss Score
8.28
Exon sequences
Seq C1 exon
GTGGGAGACGAGCAGCTGGAGCGAGTGCTCCCGTACCTGCGGCGAGGGCTACCAGTTCCGCATCGTGCGCTGCTGGAAGATGATCTCTCCAGGCTTTGACAGCTCCGTCTACAGCGACCTCTGTGAGTCAGCTGACATCACCCGGCCCGATGAACGCAAAGTGTGCAAGAACCCGGCCTGTGGGCCACAGTGGGAGATGTCTGAGTGGTCAGAG
Seq A exon
GTGAGTTCTGGGGCTTTGGAATGACCTGTGGCCATTGGAGGGGAACCTCTGAGGACCTTGGCAGTGATAGGTGTCTTTGGACTGATGTGCTAATAACATATATACTCTTTTTTTTTTCCCCTTATAATGGGATATCCCCTCCAGGATGGGGCAGCCACCAGTATCAATTGCTTTTTTTTTGTTAATTCAGCATGCACAGTGCTGGTGTTGCCCCTGAGACTGGTGCGCATTGCCCCTTTGGTACACAGAGAAGTGGGAATGGGGTTGACATGGGAATGGTGTTGCCATCAGCGCCTTTTCCTCACCTCCCATTGCACCACACCACAAAGAGAATGAAACCCATGCAGAATGAACGAAACCCCTTCCTCCCAGAGCCTTCCAAAGCCATTCTTGGTCGTCGTTCCCCATCTCCTTCCCTCCTCAGGCTGGGTGAGCCGTTACCATCACACTGTTGATGGAGAGTTGCTCCTTTCTGCTCTTGCAGGATGTTTTGACTTTCCCAATCCGGTAGAGCTAAGCTCCCTGCACACGTGCTCTCGCAGTATTTTGGCTGGCAGAGAGAACCAGAGCTGCTTACTTTACCAAAACCCCTCTACACCTCCAGCATGTGTCAGAGACAGATTGCTTGAGACAACCCTGGAGCCGCTCGCTCTGAGCCAGCAGCAGAGCTAATCTAATTTGGATCGCATCAGAAGCCGGGTGCCAAGTTGGCTTGGGAAGTAAGCCCCCAAAAAAGCACGTTTTGGAGATCTGAGGATTAACATATCAGCACAGTGCGTCTGAGCGCTGTGCTGTTGACACTCTTCCCTGCTTTACAGCATGCACAGAGCAAACGTGTGCACGGGGGACTGCAGAAACTCAACCCTGCTTCTAAATAATGTCACTGGGCTGCGCGGTGCCAAATTTATCCACAGGATAAGAAAAAAAATCCCAGCTCTGTGGTTTCATGGTGCATGTGTAGAGAGTTCCAGGCTGAAAATGCAAAACAAAAAAACCCTCAAAAGCATCTCCCAGCTCCCATAGCCCATACCCATCCCGTGTGTCCCCTCTGTCCCCACCAG
Seq C2 exon
TGCTCTGCGCGGTGCGGTGAGCGCAGCGTGGTGACGCGGGACATCCGCTGCTCGGAGGAGGAGAAGCTGTGTGATGCCAGCGCCCGGCCCCTGGCTGAGAAGAACTGCACCGGGCCTCCCTGTGACCGCCAGTGGACCGTGTCTGACTGGGGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002955:ENSGALT00000004669:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=83.3)
A:
NA
C2:
PF0009014=TSP_1=PU(14.5=15.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGTGCTCCCGTACCT
R:
AGTCAGACACGGTCCACTGG
Band lengths:
342-1403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]