RnoINT0013625 @ rn6
Intron Retention
Gene
ENSRNOG00000027742 | Adamtsl2
Description
ADAMTS-like 2 [Source:RGD Symbol;Acc:1305459]
Coordinates
chr3:5648856-5649311:+
Coord C1 exon
chr3:5648856-5649069
Coord A exon
chr3:5649070-5649155
Coord C2 exon
chr3:5649156-5649311
Length
86 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TCACCCTGGCTTCCTTGTAGTGC
3' ss Score
6.87
Exon sequences
Seq C1 exon
GTGGGAGACCAGCAGCTGGAGTGAGTGCTCACGCACCTGCGGTGAGGGCCATCAGTTCCGCATCGTGCGCTGCTGGAAGATGCTGTCTCCTGGCTTTGACAGCTCCGTGTACAGTGACCTCTGTGAAGCCACAGAGGCTGTGCGGCCGGAGGAACGCAAGACATGCCGCAACCCAGCCTGTGGGCCACAGTGGGAGATGTCTGAGTGGTCGGAG
Seq A exon
GTGAGCATCCGCAGACAGAGCTGGGGTGGTGACCTGTGCCAGAGAACGGGTGCACCATGATGCCTCTCACCCTGGCTTCCTTGTAG
Seq C2 exon
TGCACAGCCAAGTGTGGGGAGCGCAGTGTAGTGACCAGAGACATCCGGTGTTCCGAGGACGAGAGACTGTGTGACCCCAACACCAGGCCTGTGGGAGAGAAGAACTGCACGGGACCTCCCTGTGATCGCCAGTGGACTGTCTCAGACTGGGGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027742:ENSRNOT00000036995:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=83.3)
A:
NA
C2:
PF0009014=TSP_1=PU(14.5=15.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATGTCTGAGTGGTCGGA
R:
CCCAGTCTGAGACAGTCCACT
Band lengths:
173-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]