DreINT0026396 @ danRer10
Intron Retention
Gene
ENSDARG00000074033 | adamtsl2
Description
ADAMTS-like 2 [Source:ZFIN;Acc:ZDB-GENE-070705-558]
Coordinates
chr5:65214696-65218143:-
Coord C1 exon
chr5:65217930-65218143
Coord A exon
chr5:65214852-65217929
Coord C2 exon
chr5:65214696-65214851
Length
3078 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TGTCTTGTTTGTTTGCGCAGTGT
3' ss Score
7.92
Exon sequences
Seq C1 exon
ATGGGAGGCGAGCAGCTGGAGTGAGTGCTCTCGGACCTGTGGGGAAGGTTTTCAGTTTCGGCTGGTGCGCTGCTGGAAGATGCTGGCCCCTGGACTCGACAGCTCGGTGTACAGTGACCTCTGTACTGAAGCGCAGCTCGAGCGGCCTCCAGAGCGCCGGGCCTGCAAGAGCCCCACCTGCGGCCCACAGTGGGAGGTAGCCGAGTGGTCTGAG
Seq A exon
GTAAGTGAACAGCTTGTTTTGTTAATCTGTTGTTAAAGGACCATGAATACCCCCTGTTTCAGCAGGGTGTTTCCACACCTCTAGTTTAGAAAAAGTCAGGAAAGTAGGTGTGTCCAGCTCGATTTAGGTGGGAGTGTTGGGGGAGAGAAAGAGGGAAGGATTTGGATAAAAATAGGAGTTTCCATTTGGGCACGCGCTGATTTTCACTGAGGCAAAACAAAACCACACACAGGGGAGAAAGACAGTGACTCTGTTTGATGACGGTGGAATGTTTGATACCGCACGTCGTATAAGAGAAAAAACCTCAGCATTTTTCAGTAACTCAGATGCACTCGGTAGGTCAGAAAGCCAAGTGTATAGACTGTCCTATCACAAAATCCGTCGAAAATTAAACATGACAGTCGGTAATAGTTTGATTGCGGTGTTTACATGTTTACATTCGGAAAGCAGCATTAACAGCAGACCTTTCAGTCCATAATATCATAGTGACATAAACTGTAAACTGTAAACTAAGTAACTTAGAAATCATCGTAACTAAGGTCTGTCTTTGAACACTGAAAGAGTACTGCTGACGATACCAACTAACTTTGCGATCTGAATAAACAAACAAAGACCACTGATCGATCACTTACCAAATCTATAGAGACAGGACAATCCTGCATTTGGAGCCGCATCTTTTTTTAAAAGGAGACGAACAGCAAATACGGATTCACCATTTCCAGATGCGAAAAGCTTTCAAGTAAAAAATGGTCCCAACAAACGTATTTCTGTTTCGTGTCACATGCTCTGTAATCCACACGCGAGTCCAGCTGCGCTCTCATAGCGGGAAAATGAAAACAAAACCTTGAATAATGCAACACTGACGACCCGTATCTCCAAACAATTCTTCTTCTCCCACTTGTTTTGCAACACAACGTGGCGTCTCTCTGCCATCTGAACACTGTTTCAGGTAAAAACTTAAAATCTTCGAAGCTATCATGCACATTAATGAAGTTGCACCGCATACACAATAGAGCGAGCTGATTGGTTTGAACCAAGTCTTACTCATAAAATAATGCAACACACTCAGAGACGTCACGAAGTACTCCCAGGTACAGACAGCCAGTCTACACACTGGAATACACACAAGGATCTAATCGGTGCTTCAAACGCGCTTCAAACGCAGCTTCAAAAATTTGTTTCAAACCGGAAGAACGAATTTGCTCGAAGTAATGCAAAAACAACCAATTTTCACTTTTTTTGTGAAATATAGGTGTCCTAATAGTGTTTTTAACAGCATGGGACACGTATATGACTGTCAACAGCGCAAAAAAATTGTTTTGGTGTTTCGTGACCCTTTAAAACCATTAAATATTGTAAATAAACAAATAGATTTGTAGGGCCCTATGATTTCTCTGGTGCACTGTACACTTAAAAAATTTCGTTTGCTGTTTGTTCAAACTACTTTTATAAAATAGGCTGAAACGACAAAATTCGTAAAGTTTTTTTGAGGACAACTTATTGTTTTATGTTGAATCTACTTAAATTTGTAAAAACTAATAAGTTAATCATAATCCCCATATTGTTTAAGAATAGTTTGTAGAGTATTCCCTTTTATTTGTACTATAAATCTTTTGTTGTTATAAATAAATAAATGATCAAGCCATGTGATTGGTCATCATGACTGCAGCAACTTTGAGCCCCGAAGTGTCCGGCTGCCCGGCTTGACGGCTCCGTTTTCGACTCCGCCCCCGCCTGCACTCGACTAATCTCGTTGATCACCGGCTGCAACTGTTTCATGTCGAATGCACCTCATGTTAATGATAGACAAGTCCAAAAATCACATGTTGCTTATTACACACACAGGGATGCACAGCAGCACACAGATATCTTTAAATATAAAAAATTAAAGGATTAAAATGTCAAAAAAATTATCACTGTCTACGTAAATATAAAAAACCACTACCTCCTCCCATGCTTTTTTCTTCCATTTTCCAACTTACAATCATGTAAATAGCGCATTGACCATGGGGTGACTTCAACTCTAAAAAGGAATGGAAAATGAGACTCTGATTGGTTTCATGCATGCCATGCCTAAAACACACCTATAACTCAGTAAGAACGTAAGGACTAGCCTTTTAGACCATGTGCCAGGCACACAAACCATTTGTTCATATTTTTCAAAATAGCAAAAGGGGATTCAGACAAGCTCTAAGTCATAAGTCTTAAACTTGATTCCTGGAGGGCCGCAGCTCTGCACAGTTTAGTTCCAACCCTAATCAAGCACACCTGATCCAACCAATCAAGGTGTTCAAGACTACTAGAAATTATTAAGCAGGTGTGAGTTGGATAGGGGTGGAGCTTAACTATGCAGAGCTGCGGCCCTCCAGAAATCAAGTTTGAAACCACTGCTCTAAGTATACCTTTGCCATGCACTCAGGGCCGGCGCACCCATAGAGGCGACCTAGGCGGCCACCTAGGGCGGCAGTATAGAGAGGGCGGCGTCCCTGACACCTCCCTTACTACTCGCGTCTTCAGTTATGTCCGCGACACCTCCCTCACCCCCGCCTCCTCAGATATATTCGCGCATAGGCGACAGAATAGAGAGGTCGGCGTCAACGACACCTCCATCATTACCCACGTGTCCTCAGTTATATCCGAGCATAGGGCGGCAGAATAGAGGGTGGCATCCGCGACACTTCCCTCCCTCAGCACCCATGCGTCCTCAGTTATATCCGCACATAGGGCAGCAGAATAGAGGTCCGCGACACCTCACTTCAGTTTCATAACCGTTCACTTTCGTTTTCACATTGGGGTTGAGGGCGGCGTGATCGTCTTCTGCCTAGATCGGCAGTTCAGCTTGCTCCGGCCCTGCATGCACTTTAGACTGTTTACTTACATTATTAAAATAGATCCTGTTATTACTTTAAAAAATCATCTAAATAAAATGAATTCATAGAAGTAGAAAAGCTGAGATACATGTTGAATTAGGTCCATAGGCTTTTATTCTTGTTTGAATTCTAAAACGGATATGTTTTGACAGTGTTGTCAGTCTTGCGTAATGAATAAATCCAAGTTTTGTCTTGTTTGTTTGCGCAG
Seq C2 exon
TGTCCAGCTAAATGTGGTCGCAAGAGTCTGGTCACTCGAGAGGTCAGATGCTCAGATGAGGCCCATGCGTGTGATGAGGAAACTCGTCCACCATCGACCAAAAATTGCACAGGCCCTCCATGTGAGCGCCAGTGGACAGCATCCGAGTGGGGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074033:ENSDART00000108729:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=83.3)
A:
NA
C2:
PF0009014=TSP_1=PU(14.5=15.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]