GgaINT0126639 @ galGal4
Intron Retention
Gene
ENSGALG00000008472 | EHMT1
Description
histone-lysine N-methyltransferase, H3 lysine-9 specific 5 [Source:RefSeq peptide;Acc:NP_001012550]
Coordinates
chr17:2042353-2043907:+
Coord C1 exon
chr17:2042353-2042530
Coord A exon
chr17:2042531-2043770
Coord C2 exon
chr17:2043771-2043907
Length
1240 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
3' ss Seq
TTATTTATTTATTTTTCCAGCTG
3' ss Score
9.3
Exon sequences
Seq C1 exon
CATGCAAGTAAAGACCCCAAAGATGGGAGAGACAGCAGAGATCAAAAAGAATCTAAAGAGGAAGGCAACAAAAACATCCTGGAGTTTGGGAAGCCGTTGCCATTGCCCTCTCTCCCGGGCCTTCACCAGTCACTACCTCAGAACCAGAGCTATGTGGCCACCTCGAAGTCGCAGACGG
Seq A exon
GTAAGAGGACAGAGCTAAAATCCTGAGCAGCACCCAGATGTGTGTGTGTGTGTGTGTGTGTGTTGGGGTGTGCGGGCTGAGGCAGCTTGTCAAGGACTGACCCCTTTGGTAGTAGCTTTTCCACAGAGAATTGTAGTATCACAGCATGGTTGGGTTGGAAGGGATCTTGAAGCCTCCCCTCTGTTGGTGCAGCACAGGATGCAGTTGGCCTTCTGGGCTGCAAGCACACACTGCTGCTCATGTCCAGTTTTTTGTCTGCCAGGACCCCCAAGTCCTTCTCCACAGGGCTGTTCTCAGTGAGTTCTCTTTCCAGTCCATACTCACGTCTGGGGCTGCCCCAACCCAAGTGCAGCACCTTGGAGCAGAATCTGCTTTAGGATTTCCTTGCCTGGCAGCATCAGTAGGGCTGTCGCTGTAGATCTTGTTTTGACAGATGCTGCTTACTGTGAGCCACAGCTGGGTAAATAAAATGATTTGGCTTGGCAGAAAGTTTTTGAGGGGACTCTGTAGATTTTTGCTGAAACTTTGTCATAGTGAGACGTGAAGAGATGCTTTCAAGGAGCAGCCTGTTCAGCTGCTGGTGCTGGCTGTTTCCTGCTGCATGCTGTTGTTAAAAGCCTGCACTAAGCACACTTCTGATGTGTGTGCACCAAAGGCAGCAGCAGGTGCTGAGGTGTGAGGACTGGTTTGATTAGAAGGCCAGGAGAGAGACTCAACAAATTAAGACCCAATCAAAGCGGTGAAAGGAATCAAGCAAGCTTCCATAGCAGGTGTGAAATGAGGTTAAATGGCAACCAGCTCCTTATTTAAAGTGCCTTTTCTCTGTTTGTTCTTTAGTTATTATATGATGGCTTTATTGTAAGTCGGTATTATTAACCTTGCAGTATCTATTTGAGCAAGCTGGATTCTATTCAGCCTCCTGCGGCATTAGCAATGCTGCCAAACACAGGCTAATTTAAGGATTTGATGCTATGTGTGGTGCTGTAGGGACCAGAGGAAACATGGAGGGGATACTCAGAGTTTGGGTGATTTTGCAGCGTTGGCAAAGAGCTCTTTGTGTGTTTGCACATATGTATGTGTCACCTTTTGGCTGAACTGTAAATAAATTAGTTGGAAGGGGAAGCCTTTTTTCTCAGATCGTGTCCTTAAATACAGTTTCCCACATTACAGCCTCTACTTTCTATCCTTTCTTTTCACTCCTGAACCAACTTTGGCTTTATTTATTTATTTATTTTTCCAG
Seq C2 exon
CTGCTGCAGTATCTCGAAAGAAAAAACGGAGAATGGGAACCTATAGCCTGGTTCCCAAGAAAAAGACCAAAGTGTTAAAACAGAGAACAATGATTGAGATGTTTAAGAGCATAACTCATTCCTCTGCGGGTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008472:ENSGALT00000013807:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.978
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCAAGTAAAGACCCCAAAGA
R:
CACCCGCAGAGGAATGAGTTA
Band lengths:
310-1550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]