GgaINT0126697 @ galGal4
Intron Retention
Gene
ENSGALG00000001073 | NR6A1
Description
nuclear receptor subfamily 6, group A, member 1 [Source:HGNC Symbol;Acc:HGNC:7985]
Coordinates
chr17:9457910-9462396:-
Coord C1 exon
chr17:9462142-9462396
Coord A exon
chr17:9458032-9462141
Coord C2 exon
chr17:9457910-9458031
Length
4110 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGTGATCCTTTATCCTCCAGATT
3' ss Score
10.14
Exon sequences
Seq C1 exon
GTATAAAGTGACTCAGGCAGAGCTGTTTGCATTGTTGTGTCGTCTGGCGGATGAATTGCTTTTCAGGCAGATTGCTTGGATCAAGAAGCTGCCATTCTTCTGTGAACTCTCAATCAAGGACTATACCTGCCTGCTCAGCTCCACCTGGCAGGAGCTGATCCTGCTTTCCTCGCTGACTGTTTACAGCAAACAGATCTTTGGTGACCTCGCAGACGTCACCTCCAAGTACTCACCCTCTGATGATGAGCTGCACAG
Seq A exon
GTGAGGCGCCAGTGGGAGTTCTGTGCTGACTGTGTGTGCTTGAGACTTCATATGTGACAGCCCGTGGCTAGTCAGTGCTGAGTGAAAGCTTCCTTTTGCAGGGAGGTGTAGGATGTTTCCTTTCCTTTTGGTCACACAGTTGGAGTAAATGTCCTGTGATTTCAGTCTGTGGTTTCTATTGAGACTGAGTTTTTTCTCTCTGATCTCTGTAGCTGTTCTGTGTTTCTCAGTGCGTGGCAGATTTCTTCCTAATTTTACCTGAACTTTCTCTACATCCTTCTTTAAGGATCTTTGCTACTAACAGTCAGAGAGGCTTCTGGCTGCCTGAACAGATAGCTGGTCAGAGACTTTCCAGCTATTGAAAGAGAAAACGGGTACTGGTTGCATCATCTTGAGGGTGGCTCTGCTATAGCAATGCCATCTCCCTTCAGCACAACCCTACAAACCACTTTTATTGTGGGGAGAATGAAACACATTAATCTGACACTTTGGGTAACCCTGAGATACAGAAGGTCTTACTGAGAAATTGTTTGGGCAATGGAAAGATTGTTCACGAAGCTGGTTGTCTTTATTATCAAAGTGTTGGTTATTAATTGCTATTTCATTGTTTTGATTTCATAAATGTAAAGATGTTGCAACTTAGCTGTTGTTTTTCCATAGTCTGTACTATCTGATGCTCTGAGTAACCTGCCTGTCATTTATCATTTTGGCCAGGGTGATGGGGTTGGTTTTCTTTTCTTTTTTTCCTTCTGCAGTTTTGGTGCCAGCCAGATCCTTTTGGCAGCAGTCACAATCTTACAGTGTCATGGTGAAATAGGTGGGATTTACCTAGGCTGCTGCCCACCCTCTGCTTTAACATTTGCTCTGTTGGTGCTCTGCCTATGCTAGGCTTGGCAATACTGCAGGAGTCATCGGGGGATCTAAATGCTTAGTAAGGAGGGGTCATTGTAGCACCAAGCAGTTCCTTGAGGTTTCTTTGTGCGTCTCCCTTCACTCCCTGGAGACCAACTTGCTGAGGGCTGCAGGGGAGGTGAGGGCTGGCCGCAGGTGCCTCGGTTCCTGGGGCAGGTTCCTGCTCCACGCGCTCAGCCCGGCTGTTGCCATTCATCCTGTGCCTGGTGCTGCTCCTGCAGGGAGCAGCGTGGGTCAGAGGGAAGCACAATAACACTTGTTCCTATATTCATCCTTCCTTTTGTTTGTGCTGTCCTGGTCAGAGCCTCGAAAGAGAAGAGTGTGTTTCATTTGGGGTTTGTGATAAATACGAGCAAGAGGTAGGAAAACAGGACAAAGGAGGAGCCCTCCCCCTTCAGGAACGGGTGATTCAAAGCCGGTAGCCTCAAAAGTCCTTCAGAGGAGATCTGTGTACATGGGGTGAAAATAGGCATTCTTAGGAGTGGAATGCTGCTATGGTCTCTTCTGATTTAGCTTTTCAAGTATCGCTAATTGTCATTAAGGAAAATAGGAAAATGCACACCAAAAGCCATTTGCAGGAAGCTGCACAGATGAGGGCTGAGTCTCTGTTGTCTTTGTGGCAGCTTATCCACAGCAAAACTGTCTGCATGTGGCAGGGGGACGTACACTCCTGACAAGCTGTTTCCTTCAGATTTGTGAGGGAACTCATAAAGAGAGGTTTCTGCCTTGAGGGGTTTCTTGAAGAGCTTCTGTTTCCTTGGAGAACAGCAGTGCTGATTAGTGGTTATTGCAAAATGAAGTTTGGTCTCGCAGCCAGCTGAAAACAATTGCTCTGAGCTGTGCTGGTCCGACTTGTTGGGGTTATTTCGGCATTTAGCAAAATGACAGGAGCAACTCTAATGCTTAGTAGGTGACAGTGAACGCATCAGATGAGCTCCTGTGTCTTATTCCACTCTAACAGCAGGCTGAGCGTTCTCCTGGGCTGCTGGATCAAATGTTTTCTTTTATTGTGCTGTTTTCTGTAGGTGAATATGAAATGAATGGATTCCTGACCTCCCCCAGCACTCTTCTGATAGCGCTTCTCTTCCCCCTCTTCCCAGCTGATCCTGATAACCCATAGCCAGAAACTCGCCTGGTGTAAACTGCGAGGAAAGGTGTGTGGAGGAGTCGGTCCTCGGGAAGAAATAGGGCTGTGAAAAACAGAACAGCTTTGTTTGAAAGGGGGAGGAAAGTATGCATGGAAAACTAAGTCAGTTCAACTGCAGGAATGAGAGAAGAGCTCTCCTGGATTTATGAAGTGATGAGTGGCTGGTAAAAATATGCATGCTCTAAAAACAATTAAACTCCACAGACAACGGAGTGGTCTTTGTGCTCATTAACTTCTTGAGCTTTGCAATCTTGCACCTGCAAGATTTTTAATGTCAACTTGAGAGCAAGAAAACTTGTACAACTTTAGATTAGCCGACAAGGCTTTCATCACTTACAATATTACTTTCCTGAAGAACTGACCCGAAGTTCAGATAGCTTGTTTTCGCTTCTCTGAGGCCAACCTCCACCGTGCATTTTACAAATAACTTTGAAGTAAACAAACATACATGCCAAAATAAGGTGTTATTCAGTGAGAAGAGTTCTATTTTCGTTCTATTCAGAGCTGACTTTCTGGCTGCGCTCTTATTCTTTGTGCGGCACAATGGCAGAGCGCAGCTGAAGCTCACCGAAACACTTCTGCCCCACTTCTGAGGATTTATGCAATACACGGTTTCTTTGAAACCAGTGATGTTGTGGTGAGAGGCACTCAGGAGAGGCCGGTACTGGCCATTTGCACACGTGGGCAGTGCCTGCAGGCACCAGAGCTGCTCCGCACCCTGCGGCTCGCTGCTGCTTCTGCCCCACAGCACAAGGCTGGGTTCTGTGCCCCCAGGTCTGCGTCAGGTCTTTTCCCGGGGTGGAGGGGCTGTGTCCCTCTGCGTGGGGCTGCCCTCTGCCACCTGTTGGTTCCTGGCTTCTCTTGGCCAGGGTGGGAGCTCAGGGAGAAGCCTGCAGCTTGTTGTCAACAGGCTTCCCGTGCCTGAGGCTGATGGCTTTTGTGGAAACATCTCATCCGCCTCCTGTTTATGGAACTCCTTAGATGTTTATACTCCAGTGTATAGCACTGGGCTCCCCCGCGGGGCTGTATCTCCTCACCTGCTTGCTTTGAGCCCGTGCTGCCGTGTGACAAATAGCCCATGTCTGTGTGCTCTGCTGACAAACAGCACTGGGAGCTCTGAGTGCAAGCGACACACGTTCAGAAGCAAACACACCTCATACAGAGCGAGAACTCCTCAGGACTGGCATCAGTGGTGGCTGTGGCTCCCAGCAGCGGGCCCATGGCAGCCCTCACTGGTGGCACTGCTGCCATTGGGTGTCAGGGCGTGTGTACAAAGCATAATGACTCCTGCATGGCCTGCAGTCTGTTTTGGGGGGAGGGCTACAGAAGGAAGTAGCACACCTTATGTGGACTGCATGATTAACCCCAGGCATTGTGTCATCAACCTGGAGTTCCACCCGTGTTAACCTTGGTTATTTGTGTTCTGGTGCATATTTGTATTTCCGAGGAAGGTCCCTGCCTTACTGCATGGTCTCACCTCAAGAAGCTCTCAGCTGAGGAAGATGAGCAAACCGTAACAGGCAATAAATATGGTTGTGTGGACGTATGGAATCTCTGTCATTTACTCGTGGGAATTTTAGGGAGGTGATGGGTGATCCTCACCTGTCCATTGGATAATTGAGGAGTGTTGTTGTGCATGGGTCAGTGTGATTCTCCGATGTTAATTCAAATGGCAGTACACAGATAAAAGAAATGCTAGGCACTTCTGGTGTTGGAAATACGAAGTGAAGGAAGGTGCCTGCCCTGTGGGGAAGGATGGCACTGTCCTGATTGTGACCTGGGGCAATACAAGTGTAGAGAGGCAAAGCAGCATGCTTGTAAGCATAAAGAGGTAACTGCGTGTTCCTGGCTCCACTGGATGGCTGGAACAGGCTGGAGATAAACTGAAGCACTTGCTTCTACTTCCATTTAACAGTCCCAGCAGACTTGAAGCAGTTTTGTTGGGGTTTTTTGAATACTATTGCAAGATTTTAAAATCTCTGAAGTTACTAAAATGAGCTTCTTGCCATTCTTGCCCCAAATATGTTGATGTGTGATCCTTTATCCTCCAG
Seq C2 exon
ATTCAGTGAAGAGGGCATGGAGGTGATGGAGCGGTTGATCTACCTCTTTCGCAAATTCAACCAGTTGAAGGTCAGCAACGAGGAGTACGCATGCATGAAAGCCATTAACTTCCTAAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001073:ENSGALT00000001607:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=FE(42.5=100)
A:
NA
C2:
PF0010425=Hormone_recep=FE(20.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]