HsaINT0115685 @ hg38
Intron Retention
Gene
ENSG00000148200 | NR6A1
Description
nuclear receptor subfamily 6 group A member 1 [Source:HGNC Symbol;Acc:HGNC:7985]
Coordinates
chr9:124526779-124536132:-
Coord C1 exon
chr9:124535878-124536132
Coord A exon
chr9:124526901-124535877
Coord C2 exon
chr9:124526779-124526900
Length
8977 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CACCTGTGTCTGTTCCTCAGATT
3' ss Score
9.79
Exon sequences
Seq C1 exon
ATACGCTGTGACACAGGCAGAACTATTTGCCCTGCTTTGCCGCCTGGCCGACGAGCTGCTCTTTAGGCAGATTGCCTGGATCAAGAAACTGCCTTTCTTCTGCGAGCTCTCAATCAAGGATTACACGTGCCTCTTGAGCTCTACGTGGCAGGAGCTAATCCTGCTGTCTTCCCTCACCGTTTACAGCAAGCAGATCTTTGGGGAACTGGCTGATGTCACTGCCAAGTACTCGCCCTCCGATGAAGAACTACACAG
Seq A exon
GTGAGGCCTCCTGGCTGGGGAGGAAATACCAAACAACCAAACAATTGTCATCCCTGTAAGGCAGAGTTGCCTGGCCCTTCAGAGGATAGGCACTACACCTCATAGGCCTGGATTTGAATCCTCACTCTGCCACTGACTAGATTTGTGACCTTGGCCAAGTCTCTGATCCTCAGGTTCTGAACTGGTAAAATGGGGTGATAACACAATTTCCCCAGTAAGATGGTTGTTAGGAATACATTTTATGCATTCAAGCTTAGCAGAATGCTAAGCTGTAATTTTTTTTAAATTAATTTATTTTTTGAGACAGAGTCTCATTCTGTCGCCCAGGCTGGAATGTAGTGGCGCAGTCTTGGCTCACTGCAACTCTTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGTTGGGATTACAGGTGCCTGCCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGACGAGGTTTCACCATGTTGGCGAGACTGGTCTCAAACTGTTGACCTCAAGTGATCTACCCGTCTCAGCCTCTCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCACCCAGCTGATCTTTATTATACTTGGATTACTGAGATAACGCATCCAGGAAAAATAAAAATATAAATTCTGCCTACAAGGCAAGAGAGGCTCTGAACTGGAGTTTACAATCCAAGAAAGAGACCTAGGGGTCATTTTGGTGCCTATAGTGTGCCAGGCATTAGGCTAGATTTTTTTTTTTGAGACGGTGTCTGGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAATCTTGGCTCACTGCAAGCTCCGCCTCCCGGTTTCATGCCATTCCCCTGCCTCAGCCACCCAAGTAGCTGGGACTATAGGGGCCCGCCACCACGCCCGGCTAATTTTTTGTATATTTAGTAGAGATGGGGTTTCACCGTGTTAGCCAGGATAGTCTCGGCCTCCCGACCTCATGATCCGCCTGCCTTCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCGGTCTAGACTAGATATTTTTAATTGTCTTCTTTCTTTCTCGCAGCCTCCAGCCTTATAGGTGGTGTTGTGCCTATTTTATAGATGAGAAAACTGAAATTCAGAGAGACTTTCCCATAAGGGTTTGGGATTTGAATCCAGAGCCTTAGATTTGAGCATATGCCTGCCTGCCTGAAAAGCTTAGGTTCTTTGACTCCGTCTGAGATGTGGTGAGATGTTGAAAGGATAGGACTAAAAGACTGAGCTATTCTCTTTGTCATTTTCTGGCATAAAATTTTATCCCAGCTGTCCAGTATCCTTAAAACCTCCCTGTCCAGAGTGGGTTGTCTCCCTGCTGTTCTGGGGCCTGTCCAAGCACACTTTTTACTCATTTACTCTGCAGACCTGGAGCACAGGGTGACCATATTTTCTGACCCCTAAAATCAAGACAGATGATCTGCTGAGATGACTTTCTGCCTTGTTAATCCATATGAAAAGTCTTATAGCCAGGCACGTGGCTCATGCCTGTAATCCCAGCACTTTGAGAGGCCGAGGCAGGTGGATCACCTGAGGTTGGGAGTTCGAGACCAGCCTGACTGACATGGAGAACCCCTGTCTCTACTAAAAATACAAAAATTAGCCAGGTGTGGTGGCGCATGCCTGTAATCCCAGGTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGTAGGTGGAAGTTGCAGTGAGCTGAGATTGTGCCATTGCACTCCAGCCTGGGCGACAAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAGTCTTATAATGCTTAGTTTGTATTTAAATAGACATTTCAATAAATGACCTTTATTGGCCAATTCAAAATACTGGAAGTCATGGGATTCCAGGGCACCAAGAAGGAGAAAAGAAAAGGTGCCCCTGGCCGGGTGCGGTGGCTCACCCCTGTAATCCCATCACTTTGAGAGGCTGAGGCAGGCAGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGGGCGCCTGTAGTCCCAGCTGCTTGGGAGGCTGAGACAGGAGAATGGCGTGAACCCAGGGAGGTGGAGCTTGCAGTGAGCCAAGTTTGCACCACTGCATTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAGGTGCCCCTATCCATGAAAGTTGGAGAGGGGAAAGTAGCAGCCCTTACACTTTCTTCACAGAACTGGGATCCATCTCCCCCTCCCACCCAGTTGTGGCATAAAGACAAGCCAAGACTCAGGAAGAGCACAGTGCTCCAAGACCTGCAAGGGCCCTTTGCACAGCTAGGGGAGGGAGGAGTCAGCTTGCTGACTCTCTCTACTTGTTTTCTAATATTTCCTTATTAATGATGCTTACTGGCTTCAGGGTGATCTGTAAATGACAGAGTTTTGAACCCAGCTGACACTCTGTCTGGTAAATAGAGCTATCTGATTTTGCAGTTGACCTAACCCCTTGTCCAGAGACTCTAATTCATTGTTTCCATCAAATTCCTGTCTCCTGCTCCATAACTCTGCTCCATAGGGGTGTTTGGATAGCAGTCAGCCTGCTCTGATGCTGTCAGGGTTTGCAGAGCTGGCCCAAGGATCCCAGCCTCTCTGGGTGCCTGGAATCTACCAGTTCGGCCTGGGACTACAGGATCAGCCTTTGGACTCCACTTCCAAGTAATGGGTTTGCCCAGGCCCTCTGCAGGCAGGCAGGGGTCACTGGCAGTACAGGGTTCTCTGGCTTTGAGCTTCATAATGCATCCCATCTCACTGTAGCCAGTCCCTTAAGCCCCAAGACCAAGGCAGAAGTCAGTAACAGCAGAAGTAGTGAGGAAACTTTTCCTTCCTTGGTAGGAATTTTTCTCATCAAGGAGGATCTAAAGCTGTACCGTCCACTACAGTAGCCACTAGCCTCATTTGGCTTTTAAAATGTAAATTTATTAAAATTAGAAATTTAGTTCTCATTTGCACCAGCCACATTTCAAGTGCTCAGTAGCCACGTGGCGAGTGGCTACTAGTACAAATAAAGATCATTTTTATCATCACATAAAGTTTTATTGAGCGTTGCTGTCTTTAGAACATGTGTTGCTGCTGAGCTGTCAAGTGGCTTCTGAGAATAGGAATGGATTTGTTGTTAGGACTCTACTGTGGAATCCATCGATGCAAAAATAACAGTTAAACTTCAACATGTTAGTTCTGATTCCATGGCCATTTACTGAGTATCATGTGTTTTGTGGGGAGGAAGCTGGGATCACAGGTGATGCAGACATGGTTTCTGACTCAGAGTCCCTATCCTTGATTTAGTGGACTGGGAGGCAAAAAGAAGCAGATACAGCTTACAGTGCAGGGTTGTGTTGGTGGAGATGGCGGGGCATCCGAAGAGAACTGTACAAGCATAGACCAAGGAGTGAGTACGTCTGTTCACAGGGTCAGGGAAGACTTACCAGAGGAACAGACATTTGAGCTGCACCTTGAAGTGGGAATTTCTAGGAACGTTGTAGAGAACAGGAAGGAAGGAAGGCAGGAGATAACACAAAGTCCTAGAAGTTAGAGATCCTGGATGGTTGCTATGTGCAGGGAATCAAAAGCAATTTTGTGGATTTAGGGTATAAAGAGAATGTATCTAAGACAGAGAAATGAGGGGAGAATTGACTAGAGAGAAAGATACAGGCAAGACAGGTCATGAAGGTGCTCAAATGTCAATCTAAATAATTTGGGGTTTGTTGTGTAACTAGTATTAAGTCTTGGGAAGTTTTTAAGTGGAGGAATTACAGAGTCAGGTTGCATTTTAGAAAGATCTCTATGGCAGTAAAGTTCAGGATGGATTGGCGTGGACAAGACCGGAGCATGGTGGCTGGGTAGGAAGGAGGCTGTTCCATAGCCCACGTAAAAGGGAACAAGGCCTGGACAAAGCAGCAGTGACTGTGGAGACAGAGAGTGGAGCACAAAGCCAAGAGATGTCAAGGAGATAAAGTCAGTGGGACTTCAGCGAGTGGAAAATGTTGGTGATGACTGCTGATTTTTTGGACTAGCCAGGCAGGTGGGCACCAATTTTCTTAGCCAGGATGAAGGAGCAGGGAAGATCAGGATGGGAGATGAGTAACTCTGAGTTTGGTTTAGGTGTCTGTGGAGTCTGAGGTGCATGTAGGACTGCCTAGGAGGTCATAGGAAGTGGAAGAACCTCTAGAGTCAGGTTAACCACTGGAAAGCAGTAACCGCTCTGCTAGAAACCCAGGCTGTGGAGTCTGTAATTGGCCATAGCACTCTCCTACCTTGCCTGCTACTGCCTTGCTCCCACTCCCCCAGATGGCCTTTACTTCTTCACAACTCTTGAGTGCAAGTGAGTTCCTGCTGTCATGGAAAGGCTTTTCCCAGATGATACATGATCACCTCCTTTTCTCTTCTCAAATATTGAATCAAATTTATGGTGCCCATATTCCTTAATCACACCGTTATCAGACAGTGAACCGGGTGAATTTGATTTAAAGCAGATTGTAGCACCAGCCAGTGACTGCTCCTGGCCCTAATCAAGACTCCTCTCAGGAGAAGATGCCTTGAGCTAGATGGGCTTTAATGGGTACCTCTATCTCATGAGCACCAGCTCCATTTCTGCTAGATCTCTGGAAAGTTGCCTCCCAGCTTCCCTGCCTAACTATAAGGCTCAGGAAACAGGCTTTTATTTTTGCTACAATAATGGGAGAGAGATGATGATGCTATTTGTAATGATAACAGCTAACAATTATGCCAAATTCTATCTTAAGTGCCTTACATACATTATTTGTTGAATTCTTACTGCTACCTTGTGTGACTGGCACTAATATTATCCCTGTTCTAGAGATGAGGAGCATGAGGTTGAGAGGTGAAAATTAAAGGCTACAAAGATAGAGATGGAGCTAAGTTTATCACCTGTATCTGTTGTGCTCCAATGCCCAGCCTCTTTAACATTGCCTTATACTAAATTCTTATTTTCCCAGAGCATTTTCAAAAGGTTTGACTTTCTGGAATTTGTCCTGAAACTAGTCTTAGTTTTCGTCTTGGAGTCTTTACATGGGTGCTGAGATGGCAGTTTCTCTAAGGTTGTGGCTGATGGCCACTCCTGGGGGTAGGTGCATTTAGATCAATGAAAAAGAGACAACTGAGTTTCTCAGCCCCCTTAATGGGACATAACTTACATAGTGTCAGTTTCAATTGCTGACTGAATGGTCCAGTGGTTTGGGGGATCCTGGCAGGAATGTTTTCCTTGTCCCAGCATGCTTGTGTAATGGGAACCTAGAAGAAGAATGGGTGTGTTTGTCCAACTTTCTGGCTTTGAATGCTGATAATTTGTAGACAGTGAATACAGGGGCATTAAAACTGGAGTGGGCAGATGTGGAGGAGGCACGGCTGCAGGCAAAGGCAGGCCCGTGGAACAGAGAACAACTTTGTTTATCAAGGGGTGGGATGCGGGGTGTGGAGGAAAGCTTTGCAGTCAGGCTGTGGAGACTGAGTGGGGGCTGCTAGGCTGGCTGCCAGCCCCCATCACTGCTGGGGGTCCACGGTGGCTGCCTGTTGGAGGAATTTTGGAAAAGAAGGATGTGCTGTCCGCAAGAGAAAGGGCAGATCTAGGGTGTATGGACAGGCCAGGCACTTGGGAACTCCTTTGTGTCCCTCAGGTCAAGAGTCAGCCAGGAACAGGTTTGGCACTCCTGGCTAGGGGTCTGGCTGATAGCCACACACCTGCAGGGTCTGGAGTGCCAGAGTGAACACTTGGGGCAAGGGGTTGCTGATTAAAGGACAGAGCATTATCTTTGCTTGCTACATACTAGGCCACCAGACAGATGCTGACACTGCCTCTCCCGTTGTGTCCTCCTTTTTTGTGCCCTACCCCATTTCATCCCCACCCCTCCAGTCAGATACTGAAAGAAATTGGCAGTAAAGAACTTTTTTTCCCACTCCCAAGAACATAAATATCCAACACAGTGCTATGATGAGGAGTGGTCTTCACTCCCAGGCACACCGCCTCCTGCAAGTCTTAGCATCCTGGAGGCACTTGCAGTGGCAGTTCTGTGCACTGTAGCAGACCTGACATCCTCCCAAGGTTGGGCCCTGCTCTGAGTTGCTGTGGGGACACAACTCCTGAGGTCCCCTGTGGTAGTATGTGGTTAGCCTTTTCCAGGTAGCAGCTAAGAACAAGACAGGATCAAGGGTAGGCAGTGTAGTGCTGAGAAAAGTCCATATGCTTGGAATTAGAAAACCTAGGTTTGAACATTGGCCTCACCACCACTACCATTTACTTCCCGTGCAACCTTGGGGTAGCCATCTCTTTTTCTGCTTCCTCATCCCTAACATGGAAGTGATACTTACTATGTATCCTTCCAGGTTATCAGGAAGGTAAAGTGTAAGAATGCATATGAAAAGGCCTAATACATAATAGAGACTCAGTAAATAACTCCCTGAGCCTTCATTTCCACATGTAAACAAAGGGGGTTATGATTTGTATCCATTCTGTGAATTTATTGGGAATATCAATAAGATTAAATGTAGAATACTTAATGTGCCTCGCAGGTAGCAGACACTCAACAAATGGTAGAGTGGTAGAAACGGTATTATAGATTGGTGGTTATTGTGGTTATTCAATATGAATGTATCGGCCAGGCTGGGAATGTATCAGTAAAGTTGTAAAAGCCATTGGGCCAGGTAGAGAGAAACTGAGTCAGCCATAGTAGCTCAAATCAGCTAAAAGAATCCCCAGCTCATACTAGGAGCCATGCCAAGGCCGAAGGTCAACGTTCCAGATTGCATGTGCAGTCATCTCCAGTATCCGTGGAGGATTGCTTCCAGGACCCCCATGGATGCCAAAATCTACAGATGTTCAAGTCCTTCATATAAAATGGTGTAGTATTTGTGTATAATCTACGCATATCTTCCTATATATTTTAAATCAGCTCTAGAATCCTTATAATACTGGATGCGATATAAGTGATGTAAATGCCATGTAAATAGTTATTACACTGGTTTTTTGTTGGGGGAGGTTGTTTTTTTTCTTTTTTAGGTTTTTTGGTTGGTTGGTTGGTTGGTTTGGTTTTTGGTTTTTTGTTTTATTTTTTTTTTCTGAGACAGGGTCTCACTCTATTGCCCAGGCCAGTGCAGTGATAACAGTCACAGCTCACTGCAGCCTCAACCTCCCACGCTCAGGTGATCCTCCCACCTCAGCCTCCCGAGTAGCTGGGTCCACAGGCACGCACTACCATGCCCAGCTGATTTTTGTATTTTTTGTAAAGATGGAGTTTTGCTATGTTGCCCAGGCTGGTCGTGAACTCCTGGGCTCAAGCAGTCTGCCTACCTCAGCCTCCCAAGGTGCTAGGACTACAGGTGTGAGCCACCACACCCAGCCATTATATTGTGTTTTAAAAATTTGTCTTTTTTTATTGTTGTATTGTTTTGTAAAAAAAATATTTTTGATGGAGTTGGTGGAACCCAGAGATATAGAACCCATGGATACAGAGAACTAGTTCTACCTGCTGCTGAGGCTCCCCTTGGTACTTAAAAAGGGCAGGAGCCTCTGGCCCCAACCAGAGCCAGGCTTTCCCCAAGCAAGAGAAAGTGTCCTGCTTGTCCAGGAAGCCTAAGCCTGCAAAGCCTTCAAAGTTAACACAGAAAGCAGTAGATTCCAGAAAGCAATAGTTCATCCCCAGGTGTTCTGGACCCTACCCAGATAGGGCCTTCTTGGCTTGGCACAGGCCTGTAGTGCGCAGATCTGAAGATCTCACCAGGAAGCATGCCTGAAGCTAAGCTGCTTCTCTTTGTGACTGAGCTGTATCTAAGGCCTATTCTGGGACCCACTGCCCACTAGCCAGGCCACTCCTAGAATGACTCAGGCCAGACTTGACCTCGTCTTTTATAAACTCCTGCTTCCTGATTAAGTGTTTGCCTCCTTGGTTTTATGGTATCTCCATCTCTGGTATGAAGTATACCCAAAACATTAATCCCCTGGGGTGGCCTAGCCTGGGGCTCCGTTGCCTAAAACTTGGTCTTTCCTCAGAGAGCTCACTCCTAGACCCAAAGAAAAGAGCATGGGGGCTTTGAGCCACTTCTGCTAGGGTACACCACCTTAGATACTGGAAAAACCAAGGCTTTGGGTTCAGGTTCCAAATTCCTACTCTGTCACCAATTAACTGTATTTGTGGACCAGACCCTCCCTTCTTTGAACTTCAGTTGCTCATTTGTACAGTGCTGATGATTATCTCACCTAGCTCATAGGGTTGAGAGAATTAAATGTGATAATGCTCACAAAGTGCCCAGCACAGAGGATGGCGTGGTATGGAAACTCAGTTAACGTTTTCCTCCCTCCTGCCAAAGTCAGGGATGCCAATAAAAATTTTCACTATGCATAACCTCAGCTCTGCTGGAAACAGTTAACACAAGCAAATACAATCAGCAGCTTTTTTTGCAGTGTGGCAGAGGCTCACATAGAGTCACCATGGCAGCTGCCATTGATACCAGAGGCTGAATCTCTACAATAGCTGTATCTTAATAATGTTGTACTTCTCCACATTTATATCCCAGACCTTCTTGGGCCCTTGTTAGCCCAAGAATGCAAGCATTATCATTTTGCAGAGGAGGACCTCAAAGCATAGAGGGGTCAGATGACCTTGCCAAGATCTCATAGCTTGTGTGTGATGGAGCTGGATTTGAACCTAGGTTGACTCTACCTGACCTTGGAAAAAGCAGCTTGCATGAGCTACGTTGGCCTGTAGACAAAGCATGGATCTGCCTGTACTTCCCAAGTGGCTTTGGATCCCATTTCCCCCAAGCTCAGCCTGTTTAAGGAGCTGTAGGAGCTCTCTGGCTGCCCTTTCCTGGCCCCTACTGGTGTCACAGCCAACTGTTAACACCTGTGTCTGTTCCTCAG
Seq C2 exon
ATTTAGTGATGAAGGGATGGAGGTGATCGAGCGGCTCATCTACCTCTATCACAAGTTCCATCAGCTAAAGGTCAGCAACGAGGAGTATGCTTGCATGAAAGCAATTAACTTCCTAAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148200:ENST00000487099:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(43.0=96.5)
A:
NA
C2:
PF0010425=Hormone_recep=FE(21.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development