GgaINT0126701 @ galGal3
Intron Retention
Gene
ENSGALG00000008936 | F1NV60_CHICK
Description
NA
Coordinates
chr17:1318926-1319813:+
Coord C1 exon
chr17:1318926-1319043
Coord A exon
chr17:1319044-1319662
Coord C2 exon
chr17:1319663-1319813
Length
619 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
CACAAGGTGCTCTGTTGCAGGAT
3' ss Score
6.16
Exon sequences
Seq C1 exon
TACGGCCTGGTGTTCGACGCCGGCTCCACGCACACGGCTCTCTACGTCTACCAGTGGTCTGCAGACAAGGAGAACGGCACGGGCATCGTCTCCCAGGTGGAGTCCTGCACTGTGAATG
Seq A exon
GTGAGAGCAGAGTGCTGGGACGTGTCTGTCCCTCTCCCCACATTGCTGCCGCCGGCTCCTGCAGCACAGAGGGGGATCTGAGCCCTCAGCCTGTGCTGGGCCGAACGGAGGCGGCCCCAAAGAGCCCAGGGGAGCCGGTGCAGAGGAGCAGCTGCGGTGTGAGGGTCCCTATAATGATGGGGGCTGTGCTGCCGGAGGTGGGTCGGAAGCTCGGCCCGCAGTTAGCATGGCTGATGCACCCGGCGCTGTCGTGCAGCCCACTGTCGTGCATCACCTCACACCTCGGCTGTTAGATGTGCAACGTTTGCAACCTCTCCCCTGCAACCGCTTCCTGGAACATCTCTTTACACTTCTTCCCACAGGGCCTGCTAGAAGCTCTGCGGAACTCACAAGATCTTCCTGTGTCTCTGCTGGCTATTTTTGCTTGCAGTTCCTATCTGCACTTTGAGTTAACAATTGTCCTTTTCCATACGTTTGCACAGCCCCAAGCACGGGGTTTTGGGCTGTGACTGTGACTTCTAAGAGGATGAGGGAGAGCCCTTGGCGGGGGAGTGGGAGGAGGTGCCCCCACTCTGCCGTTCCTCCTGGGCTGGCTCCATCACAAGGTGCTCTGTTGCAG
Seq C2 exon
GATCTGGCATTTCCAGCTATGCAGATAACCCCGCTGGAGCTGGAGCCAGCCTGAAGCCCTGCCTGGCCAAGGCCATGACAGTCATCCCTGCGGAGCAGCAAGGGGAGACACCCACCTACCTGGGGGCCACAGCGGGCATGCGGCTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008936:ENSGALT00000014522:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(9.1=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGGCCTGGTGTTCGACG
R:
CTGTGGCCCCCAGGTAGG
Band lengths:
250-869
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]