DreINT0063287 @ danRer10
Intron Retention
Gene
ENSDARG00000005565 | entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:ZFIN;Acc:ZDB-GENE-040724-142]
Coordinates
chr6:41048978-41050345:+
Coord C1 exon
chr6:41048978-41049095
Coord A exon
chr6:41049096-41050194
Coord C2 exon
chr6:41050195-41050345
Length
1099 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TATGTTTTTATCTTCAATAGGTG
3' ss Score
9.98
Exon sequences
Seq C1 exon
TTCGGGATTGTTTTTGATGCCGGCTCCAGCCACACTGCCCTTTTCCTGTACCAGTGGCAGGGAAACAAAGAAAACAACACTGGAATCGTGTCGCAGAAACAGAGCTGCGATGTGGATG
Seq A exon
GTGAGTCAACTTCAACATTATCAGAACAACTATACCAAAAAATGTACATTTAATTTACTATAAAATTGTATATTAATAAATAAAGTAGCAAGAATAAATGTAGTTTTTATTATTAATATTTTACTTATTGTTTTTTTACAATTATTTTATTTTTTTAATTGTTAGTCAGACTCTAAGAGTTCAATCAACTACATTGAAAAGTTTGAAGAAAAAACTTTAACGTTGACTTGAGAAGTAGTTTTACATTGGAAATAATCCTTAGTGTGAAGCGGGTTTAGGCTTGACATTGGAAGCAAAGGTTTTATAAAATATATGTAGTTCATTTGGCGTTCTGTGTGGATGGAATGGCACTAATATGATTTTGAGGAGCTTTGTGTAGTTACTTAAGCTTTAGTACATGCTTGTGAAAGTAAAAGTATTCTGTGTTGTTTTTTTTGTGTGTTGCTGGTGGTTATTAGCAGGGCAAGACAGAATCTGCAGACATTTTTGCTATGTGTTTAGCAACCACCAAAAATGCTATAGCAAGAGTGCTGCTATGAGGTTGCTAGGGTGTTTTGAGAGGTTGATGTGACGTCGCTATGCATTTTCATAATGAAAACAAATGAAGCCCAGGACAAAGGTTTTAAGGATGGGCCTCCCTCCCATGTGCCGATAGTGAGTAGTTTATACAAAATCGACTCTTTTATGTAACAAATGAGGAGGACATAGAAGACCTCAGTGAACATGTTTATTCAGCTTAGAGGTACATGGCAGTTCCCTGGTTTCAGTCAAGTCAGAATGAACTCATTCTTAAACTAAAAACTTTTATATAGTTTTAGTTTACTGCAATTTAAAGTTGCTGTTGACACATCTGTTCTCTTTTTGTTAATGCATTAAGTGAGATGGTTCTCTGTACCCCACACCTATCCCCATTATACCATTTTCTTAAGATGTGATCATCTCAAATAAAACAGAGAGAACAAATTGTTGACTTGTCTTTTCTATCATAATCCACTTTTGGGAAATGAGCATCAGCACACCATTTAGAATGAAATTTGGGTCGAGGCAGATTAATTTTTTACACAAGGTTAAAATAACTGTATGTTTTTATCTTCAATAG
Seq C2 exon
GTGATGGCATATCAAGCTATGTCCAGAACCCTGCAGGAGCGGGAGAAAGTCTGAAGAAATGCTTGGACATTGCTAAGGCAGCAATACCAACAGAACAGCAGAAGTCCACACCTGTGTACCTCGGTGCCACTGCTGGCATGCGGCTTCTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005565:ENSDART00000011245:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(24.8=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATTGTTTTTGATGCCGGC
R:
TTTAGAAGCCGCATGCCAGC
Band lengths:
266-1365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]