GgaINT0043432 @ galGal4
Intron Retention
Gene
ENSGALG00000007078 | ENTPD1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:RefSeq peptide;Acc:NP_001012925]
Coordinates
chr6:21572734-21573650:+
Coord C1 exon
chr6:21572734-21572851
Coord A exon
chr6:21572852-21573499
Coord C2 exon
chr6:21573500-21573650
Length
648 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
AGTCTTCCAATTTCTTGCAGGCC
3' ss Score
8.67
Exon sequences
Seq C1 exon
TATGGGATTGTGCTAGATGCGGGGTCATCCCACACAAACCTGTACGTGTACGAGTGGCCAGCAGAGAAGGAGAATGACACTGGAGTGGTGCAGCAGGTGGAGGTGTGTAAAGTCGAAG
Seq A exon
GTAAGAGGAAAGAAGGAAGCAGTGAAAGGGGGTGGATTGGAAAGAGAATGTGGCCAAAGGGTGGTGGAGATGAAATTTGGGGAACTGACCAATAGTGATATCAACATTAAATCTATGAACTAACGTATATTCCACTGCTTCCTGCTAAGAACTTATTGCTTGAACTTCCCGAGAGGAAAGCTGGGTCCATTTTTCCTTTCATTTGGGGATGCACAGAGTTAAATGCTTTTTGGAAAGAGCTACACCAAGGGTTGTACTTAACAACAACAAAATGGAATTTCTGTGTGTACCCTTGCTGAAGCACTGATAAACATCAGTGAGGAAGAAGGACACTCTGATCTCATTTTAAAGGAAAGATGTTGGATTTATGTGACAAGGTTACTAAACTTGAGCATGTTGTGGTTTATTTTTTTATAATATTTAGTTGCTATGTAGATATGTAATGGTTTTGGAAGGCATAAAGAATGCTGTCAGTCACAGCTTTTGTCACAGGAATGACTGATGCTTTAGGGTTTCTGAAACCTACAAATGGCGTTGAATCAACTGTTGCTGCTTGTGCTAGTGATATTGTTTAGTGGACAAGGCTCATGACAGCCTTCTGGGGTTATGCTTGGAGATGATGCAATGAAGTCTTCCAATTTCTTGCAG
Seq C2 exon
GCCCAGGGATCTCAGGTTACTCCCAGACCACAGAGAAGGCAGGTCCCTCTCTGGTGCAGTGCCTCAGACAAGCAGAAGGGGTGATTCCCTTAAAGCAGCACCAAGAGACGCCCGTCTACCTCGGAGCAACTGCTGGCATGCGGCTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007078:ENSGALT00000011467:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.039
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(33.3=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(11.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGTGCTAGATGCGGGGTC
R:
TGAGGAGCCGCATGCCAG
Band lengths:
263-911
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]