HsaINT0056481 @ hg19
Intron Retention
Gene
ENSG00000138185 | ENTPD1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:HGNC Symbol;Acc:3363]
Coordinates
chr10:97599448-97602251:+
Coord C1 exon
chr10:97599448-97599565
Coord A exon
chr10:97599566-97602100
Coord C2 exon
chr10:97602101-97602251
Length
2535 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TCTTCTACATTTTTTCCTAGGTC
3' ss Score
9.21
Exon sequences
Seq C1 exon
TATGGGATTGTGCTGGATGCGGGTTCTTCTCACACAAGTTTATACATCTATAAGTGGCCAGCAGAAAAGGAGAATGACACAGGCGTGGTGCATCAAGTAGAAGAATGCAGGGTTAAAG
Seq A exon
GTAAGATGAAGACCAAGGGAAGGGGAGGCCAACAGTGGGGCATGAGAACATGAGAGGTGTATGACCAGTAGAACACAAGAGAAAAAGGAGTCCCACGCATAGGAAGCCAAGTGAAGAAAACAGTGCAGCTGCTGTTGTTATGTTATCGTTACAGAAAACATATTGAAATCAGTCGTTAATGATCAAAACCTAAGAATAAACACACATAAATATAATTAATAGTAGCTCCCATCAACAGAACACTTCTGCATGCTATGTACTTAGTACTGAACATGTGTTACTTCAGTATACCCTCATAATCTCCCTTTGAGGTATGCATTATTATACTAATTTTTTAAAAATGAGGGCACTGAGGTTGAGAGAGGTTATACCACTTGTTTGTTACTCAAGCTAGTAAGTGATGGAGCTGCGGTTCAAACCAAGTTCTGCCCGACTTCAAGTCTGCATCTTAGCCAGTGCTTCTCAAACTTGCATGAGCTTGTTAAAAACACAGATGATGGGTCCCATCCCCTAGAGTTTCTGAGTCAGCAGATCTGGAATGAAGCCTGATAATCTGTATTTCTAAGAAGTTCCTAGGTGATGCTAATCTGTCTGGTTCAGAGATTTATTGCTCTCTTAATCTTTGTACCCTGATCTACAGCTTGGAAGACATTTTTCAAAGCTTTCAGCTTCTGTGTAGGCAGGAAAGACCAAATTATAGGCTCTTAGGGCTGGGAAAAGGAACTTACAGATCGTTTAAATTTTGTTTCACAGAGAAGGAAACAAAAACCTGGAGGATTAGTGCCTTGAAAGTAGCAACAGAATAGAGACAAGAATCTAGGTCTCCTAATTACACTCTAGGTTTCCTGCTACTCTGAGCTGCTGCATTATATATCAATAATTTTTTTCTTTTAAGGTCATAATATGTTAGAGTGGTTGACATTCAGCTTTCAATCCCTTTACCCAGTACCCTACCATGCACCATTATACCACAGTCTCTCTGACTTTTATCTCTCTTAGCCTTTTGAGCTGGGAACCCACTGTTTATTTTTAGTCAGACTGATAGCCTAGATCCTAGAAGATAATTGATTTTCAGTTTGACAGCCTGTGGAATCCACTAATTTTCACAGGTCGTCAAGAAAGTAGTAGAGAGGAGATATTTCCAAGAGAGCAAGTCATTCTACCCAGTAGCCCCATCAATACTGACACTTTGGCCCCATCTGAGACAGTACTTCTGGCCTTTCTTAAAGCCCAAATCCCTCATTTTATTGGCTTTTATTTGACACACTGCCTTCCATTTTTAAAAGTTATTTTAATGGCCAAGCACGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCGGATCACAAGGTCAGGAGATGGAGACCATCCTGGCTAACACGGTGAAACCCTGTATCTACTAAAAATACAAAAAAATTAGCTAGGCATGGTGGTGCGTGCCTGTAGTCCCAGCTACTAGGGTGGCTGAGGCAGGAGAATCACTTGAACCCGGGAGGCGGAGGTTGCAGTTAGCCGAGATCGCGCCACTACACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAATCTAGCAGATGTCCTTCTTCTGAGACTTATCCCATGAGCGTTTGGCCTAACAATGAAGGATTCTTCCCTCTCAAAAGAGAGAGTTCTCTAGTTAATCAAATATTTAACACCAAATTTTCTGAATCAAAACAATTAGCTGGTAACTTAGAGCTGATTTTCTCATGGTTATTAGGCTGTTTGAAAACCTGTGAATGATCTGGATAACTTATTTGAATAATTATCCTTAAAGCAATTACTCTGCTATGAAGCACTGATAGTGTAGATATTTATCTTAATGTGAGATGAAAGTGTTGTTATAACTTCAAAAAGCTTAAGGAATCTTGGCTCTAATCCTCCATAGCAACAGTCGGTTTTGCTCTAAAACTGGAAAAACAGTTTTGCTAGGGAGGCAGGATATCGGAGTGGAAAAGTCACTGAAGAGACATAGATTCTGTTCCTCTTTCTTGTAACAGGAAGCAACTCCACCTCAGAAACTTTAAGGTGCTGGCCAGGATCAGATAACTAGTTAGTGGCAGCTTCCATCTTTTTAGTAAAAGCCAATTTGTCTGACGCTTAATTTTTATTCCAAGTGTTATCTTTAGGTCTTTTAGGAACTAGTGTCATTAATTACAGTGTTCTGGAGGAAATATCAAAAAGCAGCTAACAGAGTAGCTATCTATAATATCCCCATTAAAGTCTGAGAATGTTATGCAATTGAATATGAAATTGCGCCATCCAGTGGCAGAATTATTGAACACTGAACAGACCCAACTTAAAGTCTGGAAATTAAATCCTCTCAAGGCTAGGTCCAGTGAATTACCCTCTAAGTACAATAACCTAATGTATAGTACATCAGGAAATTGTTTTCTTGTATTTTTTTCAAAACACCATATTTTGATCTACTATTGTCAAGGTATGTTTTATAATTTTTTTTTAAAAGATTGTTATCTTCTACATTTTTTCCTAG
Seq C2 exon
GTCCTGGAATCTCAAAATTTGTTCAGAAAGTAAATGAAATAGGCATTTACCTGACTGATTGCATGGAAAGAGCTAGGGAAGTGATTCCAAGGTCCCAGCACCAAGAGACACCCGTTTACCTGGGAGCCACGGCAGGCATGCGGTTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138185-ENTPD1:NM_001776:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(12.0=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(11.6=100)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)