Special

HsaINT0056481 @ hg19

Intron Retention

Gene
ENSG00000138185 | ENTPD1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:HGNC Symbol;Acc:3363]
Coordinates
chr10:97599448-97602251:+
Coord C1 exon
chr10:97599448-97599565
Coord A exon
chr10:97599566-97602100
Coord C2 exon
chr10:97602101-97602251
Length
2535 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TCTTCTACATTTTTTCCTAGGTC
3' ss Score
9.21
Exon sequences
Seq C1 exon
TATGGGATTGTGCTGGATGCGGGTTCTTCTCACACAAGTTTATACATCTATAAGTGGCCAGCAGAAAAGGAGAATGACACAGGCGTGGTGCATCAAGTAGAAGAATGCAGGGTTAAAG
Seq A exon
GTAAGATGAAGACCAAGGGAAGGGGAGGCCAACAGTGGGGCATGAGAACATGAGAGGTGTATGACCAGTAGAACACAAGAGAAAAAGGAGTCCCACGCATAGGAAGCCAAGTGAAGAAAACAGTGCAGCTGCTGTTGTTATGTTATCGTTACAGAAAACATATTGAAATCAGTCGTTAATGATCAAAACCTAAGAATAAACACACATAAATATAATTAATAGTAGCTCCCATCAACAGAACACTTCTGCATGCTATGTACTTAGTACTGAACATGTGTTACTTCAGTATACCCTCATAATCTCCCTTTGAGGTATGCATTATTATACTAATTTTTTAAAAATGAGGGCACTGAGGTTGAGAGAGGTTATACCACTTGTTTGTTACTCAAGCTAGTAAGTGATGGAGCTGCGGTTCAAACCAAGTTCTGCCCGACTTCAAGTCTGCATCTTAGCCAGTGCTTCTCAAACTTGCATGAGCTTGTTAAAAACACAGATGATGGGTCCCATCCCCTAGAGTTTCTGAGTCAGCAGATCTGGAATGAAGCCTGATAATCTGTATTTCTAAGAAGTTCCTAGGTGATGCTAATCTGTCTGGTTCAGAGATTTATTGCTCTCTTAATCTTTGTACCCTGATCTACAGCTTGGAAGACATTTTTCAAAGCTTTCAGCTTCTGTGTAGGCAGGAAAGACCAAATTATAGGCTCTTAGGGCTGGGAAAAGGAACTTACAGATCGTTTAAATTTTGTTTCACAGAGAAGGAAACAAAAACCTGGAGGATTAGTGCCTTGAAAGTAGCAACAGAATAGAGACAAGAATCTAGGTCTCCTAATTACACTCTAGGTTTCCTGCTACTCTGAGCTGCTGCATTATATATCAATAATTTTTTTCTTTTAAGGTCATAATATGTTAGAGTGGTTGACATTCAGCTTTCAATCCCTTTACCCAGTACCCTACCATGCACCATTATACCACAGTCTCTCTGACTTTTATCTCTCTTAGCCTTTTGAGCTGGGAACCCACTGTTTATTTTTAGTCAGACTGATAGCCTAGATCCTAGAAGATAATTGATTTTCAGTTTGACAGCCTGTGGAATCCACTAATTTTCACAGGTCGTCAAGAAAGTAGTAGAGAGGAGATATTTCCAAGAGAGCAAGTCATTCTACCCAGTAGCCCCATCAATACTGACACTTTGGCCCCATCTGAGACAGTACTTCTGGCCTTTCTTAAAGCCCAAATCCCTCATTTTATTGGCTTTTATTTGACACACTGCCTTCCATTTTTAAAAGTTATTTTAATGGCCAAGCACGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCGGATCACAAGGTCAGGAGATGGAGACCATCCTGGCTAACACGGTGAAACCCTGTATCTACTAAAAATACAAAAAAATTAGCTAGGCATGGTGGTGCGTGCCTGTAGTCCCAGCTACTAGGGTGGCTGAGGCAGGAGAATCACTTGAACCCGGGAGGCGGAGGTTGCAGTTAGCCGAGATCGCGCCACTACACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAATCTAGCAGATGTCCTTCTTCTGAGACTTATCCCATGAGCGTTTGGCCTAACAATGAAGGATTCTTCCCTCTCAAAAGAGAGAGTTCTCTAGTTAATCAAATATTTAACACCAAATTTTCTGAATCAAAACAATTAGCTGGTAACTTAGAGCTGATTTTCTCATGGTTATTAGGCTGTTTGAAAACCTGTGAATGATCTGGATAACTTATTTGAATAATTATCCTTAAAGCAATTACTCTGCTATGAAGCACTGATAGTGTAGATATTTATCTTAATGTGAGATGAAAGTGTTGTTATAACTTCAAAAAGCTTAAGGAATCTTGGCTCTAATCCTCCATAGCAACAGTCGGTTTTGCTCTAAAACTGGAAAAACAGTTTTGCTAGGGAGGCAGGATATCGGAGTGGAAAAGTCACTGAAGAGACATAGATTCTGTTCCTCTTTCTTGTAACAGGAAGCAACTCCACCTCAGAAACTTTAAGGTGCTGGCCAGGATCAGATAACTAGTTAGTGGCAGCTTCCATCTTTTTAGTAAAAGCCAATTTGTCTGACGCTTAATTTTTATTCCAAGTGTTATCTTTAGGTCTTTTAGGAACTAGTGTCATTAATTACAGTGTTCTGGAGGAAATATCAAAAAGCAGCTAACAGAGTAGCTATCTATAATATCCCCATTAAAGTCTGAGAATGTTATGCAATTGAATATGAAATTGCGCCATCCAGTGGCAGAATTATTGAACACTGAACAGACCCAACTTAAAGTCTGGAAATTAAATCCTCTCAAGGCTAGGTCCAGTGAATTACCCTCTAAGTACAATAACCTAATGTATAGTACATCAGGAAATTGTTTTCTTGTATTTTTTTCAAAACACCATATTTTGATCTACTATTGTCAAGGTATGTTTTATAATTTTTTTTTAAAAGATTGTTATCTTCTACATTTTTTCCTAG
Seq C2 exon
GTCCTGGAATCTCAAAATTTGTTCAGAAAGTAAATGAAATAGGCATTTACCTGACTGATTGCATGGAAAGAGCTAGGGAAGTGATTCCAAGGTCCCAGCACCAAGAGACACCCGTTTACCTGGGAGCCACGGCAGGCATGCGGTTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138185-ENTPD1:NM_001776:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.025 A=NA C2=0.020
Domain overlap (PFAM):

C1:
PF0115012=GDA1_CD39=FE(12.0=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(11.6=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development