MmuINT0057663 @ mm10
Intron Retention
Gene
ENSMUSG00000048120 | Entpd1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:MGI Symbol;Acc:MGI:102805]
Coordinates
chr19:40720457-40723237:+
Coord C1 exon
chr19:40720457-40720574
Coord A exon
chr19:40720575-40723086
Coord C2 exon
chr19:40723087-40723237
Length
2512 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CCGACTGTATCTTCCCTCAGGTC
3' ss Score
10.11
Exon sequences
Seq C1 exon
TATGGGATTGTGTTGGATGCGGGGTCATCTCACACCAACCTGTACATCTACAAGTGGCCGGCCGAGAAGGAGAATGACACAGGGGTGGTGCAGCAGTTAGAGGAATGCCAAGTGAAAG
Seq A exon
GTAAGACGGGGGCGGGGCACGGAACGGGAAGAGCGGGCCACAGGAATGTGAGAGGCGTGAGGATCTGCCGTTGGTATTTTATTATCACTGTAAAATGACACTGAGCCAGGCCTAGTAGCACAGGCTGGAAAGCAGGTGGATCATCAATGTTCAGGCCAGCCTGGACCACCTAGTAAGACTCCGCTTTAAACAAGACACAGATGTAGCTCAGCGGTTGTAGCATATGCCTCACATGCATGAGGCCCTGTGGTCAGTCCTTATTACTACTGCCAGTAGTAACAATAATGTTGAGATCAATTCTTGAAAAATAGGCAAATTTAAAAATAGCTGAAGGTGTCACTCAATGGTATTGTACAGGCTTAATATTCATGATGTTCTAGGTTAGGTTCTCAGCAAAACACACACACACACACACACACACACACACACATGAACTGAGCAATAGTAGCCCTCGTCAATAGGGCATGTCTGTGTATACTTGTATCATGCTTACAGCAATGTATCATGAACTCAGCACACATTTTTCACTCTCATGATCTGGTAGGTGAGCAGCAGCAGCTCTGTCCTAAAAACAAGGGCTGCGAGATAAGACAGCTCATGCCACGTGTTTAAAGTTACTTAAGTTGGGGACTGATGGATCTGGCTGACATATCCACATCTCAGCCGTGGTTCTCAGACTTGAAATGGCCTAGCACTACCTGGGGTGGGGGTTGGTGGGAGCTCTTAGCACACAGACATAGGGCCGCCTACAGCCAGAGATCCCAAGTCAACAGGTCTGGGTGGGAGCCTGGGGCTTTACATTTCTACCAAGTTCCCTGGTGCTTCTGGTGGGATGCTCGACCTCTCTTCTTATTTTCTATTTTCGGCTCAGACTGCAACCTGGAGGAAAACCTCAAAAGCTTTTGTTCTCTTCAGAGGCAGAGAAGAGTAGATCACAGACTTTTAGGGTGGGGAGGGGGGCGGGGGGGGGGCGGGGGGGTGTCATTTAAATCTCATTTTCCAGGGAAGGAAGCTGAAGCCTGGAGGACCCTGTAAGTTTCGAGAGTCCAGATGGTGGTCCAGGCCCCTAGCCACACTACAGGCTCCCACAGAAGCACTGCTGATAATCTCCCCCATACCCCGTCCCAGCCAAAGTCACTTTTAACATCACACCTGGAGGATGGCTGATAGCTCAGCTACCCTGACTTGCTCTCCGCCACGCGCCCCTGTGAGCTTTGTCTCTGCTGGCCTTTTGAGCCAAGAACACACTGGCTTTTTTTTTCAAACAGGTCGTCTAGATCTCAGGAGAGACGTGACTTTTAATCTGATGGCGAATAGCTTCCACTGACCTTTGTAATTTGCCAAGGAACTGGGCAGGGTTAGAAAGAGAAAGCCACTCTCCCTGGACCCTGGTGTGCCAGTACTGAGGCCTTGCTACGACCGAGGCGGTGCTCATGAAGGTTCTTTCTTCTGAGGATCATCTCATGAATGCATGTGTTTGAACCCACACATACAGAGTTAGCAGAACGCTGAGGTCAGATTTCCTGAATCAGAAGCAAGCCACTAACAGAGCTTGGGGCTTCTCATTATGTTACACAAACAGGCGTTTAAAAAGCCCGTTTGAATAATCACCTTGAAAGCAAACTCTTGGTAGGAAGCAGTCGAATTCACCTCAGGGTAGGAGTCTTGGCTCCAGTCCTCTCCATAACAACCGTTAGTTTGCTCTAAAATTGAAATAACAGTCTTAGTAGGGAGGCAGGGGTACCAGAGCAGAAAAGACTCAGGGTCTGCAGACTCTGTTTCTGTTTATTCTAACAAAGGAAGAAACCCCATAAATGTTAGGGCATACTCTATGACATAACTAGTTAATGACACACTCTGTCTTTTCAGGAAAAGCCAGCGTGTTGGGTACTTTCCACTAAATGCCATCTTTACCTAGGCCCTCTAGGAACTAATGTTGTTAATTACAGCTCTGTGGAAAGGATCATTCAAAAGAGGCCAACAGAGAACCCACTGTAAGAGCTGCATTAGTGCCAGAGGATGTGAAATGGCACCACCTTGTGGCCAAATCAATGAACACCAGGTTTTACCAGCAAAATTTTAAAATTACAAGATTTAAAAAATACAATACTACATATACATGTGTTAGCTACTTTTTTTCCAAGACTTTAATGAAATACTTGAGAGAGAAACTTAAGGGAAATAGGGCTTATATTGGCCCTTGCTTCTAAGGGAGACATGTCCATCATGGTGGGGAAACCATGGCAACAGGAGCTTTGCAGTCCACATCCTAACTCCCCAGGTAAACCTCTCTGCAAACAGCCTCACAGACACACCCAAAAGGGTGCCACGCCCATCCACTAGGTGCTTCTGACTGCAGCCGCTCTCCCCGCTAAGAAATATAACCCAATGTACGCCATGCCAAGAAGCGTTTCCTCCCATTTTCCTAGCAAACACTTTTAAAAAATATGGTCAAGGTAGACGCTCCACACTTTTTCTTTTAAAGGTTTTCACCGACTGTATCTTCCCTCAG
Seq C2 exon
GTCCTGGAATCTCAAAATATGCTCAGAAAACAGATGAAATCGGTGCGTACCTGGCCGAATGCATGGAACTGTCCACCGAACTGATACCAACATCCAAGCATCACCAGACTCCTGTCTACCTGGGAGCCACAGCAGGCATGCGCTTGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048120:ENSMUST00000112231:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=NA C2=0.027
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(16.2=100)
A:
NA
C2:
PF0115012=GDA1_CD39=PU(46.0=96.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types