HsaINT0056481 @ hg38
Intron Retention
Gene
ENSG00000138185 | ENTPD1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:HGNC Symbol;Acc:HGNC:3363]
Coordinates
chr10:95839691-95842494:+
Coord C1 exon
chr10:95839691-95839808
Coord A exon
chr10:95839809-95842343
Coord C2 exon
chr10:95842344-95842494
Length
2535 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TCTTCTACATTTTTTCCTAGGTC
3' ss Score
9.21
Exon sequences
Seq C1 exon
TATGGGATTGTGCTGGATGCGGGTTCTTCTCACACAAGTTTATACATCTATAAGTGGCCAGCAGAAAAGGAGAATGACACAGGCGTGGTGCATCAAGTAGAAGAATGCAGGGTTAAAG
Seq A exon
GTAAGATGAAGACCAAGGGAAGGGGAGGCCAACAGTGGGGCATGAGAACATGAGAGGTGTATGACCAGTAGAACACAAGAGAAAAAGGAGTCCCACGCATAGGAAGCCAAGTGAAGAAAACAGTGCAGCTGCTGTTGTTATGTTATCGTTACAGAAAACATATTGAAATCAGTCGTTAATGATCAAAACCTAAGAATAAACACACATAAATATAATTAATAGTAGCTCCCATCAACAGAACACTTCTGCATGCTATGTACTTAGTACTGAACATGTGTTACTTCAGTATACCCTCATAATCTCCCTTTGAGGTATGCATTATTATACTAATTTTTTAAAAATGAGGGCACTGAGGTTGAGAGAGGTTATACCACTTGTTTGTTACTCAAGCTAGTAAGTGATGGAGCTGCGGTTCAAACCAAGTTCTGCCCGACTTCAAGTCTGCATCTTAGCCAGTGCTTCTCAAACTTGCATGAGCTTGTTAAAAACACAGATGATGGGTCCCATCCCCTAGAGTTTCTGAGTCAGCAGATCTGGAATGAAGCCTGATAATCTGTATTTCTAAGAAGTTCCTAGGTGATGCTAATCTGTCTGGTTCAGAGATTTATTGCTCTCTTAATCTTTGTACCCTGATCTACAGCTTGGAAGACATTTTTCAAAGCTTTCAGCTTCTGTGTAGGCAGGAAAGACCAAATTATAGGCTCTTAGGGCTGGGAAAAGGAACTTACAGATCGTTTAAATTTTGTTTCACAGAGAAGGAAACAAAAACCTGGAGGATTAGTGCCTTGAAAGTAGCAACAGAATAGAGACAAGAATCTAGGTCTCCTAATTACACTCTAGGTTTCCTGCTACTCTGAGCTGCTGCATTATATATCAATAATTTTTTTCTTTTAAGGTCATAATATGTTAGAGTGGTTGACATTCAGCTTTCAATCCCTTTACCCAGTACCCTACCATGCACCATTATACCACAGTCTCTCTGACTTTTATCTCTCTTAGCCTTTTGAGCTGGGAACCCACTGTTTATTTTTAGTCAGACTGATAGCCTAGATCCTAGAAGATAATTGATTTTCAGTTTGACAGCCTGTGGAATCCACTAATTTTCACAGGTCGTCAAGAAAGTAGTAGAGAGGAGATATTTCCAAGAGAGCAAGTCATTCTACCCAGTAGCCCCATCAATACTGACACTTTGGCCCCATCTGAGACAGTACTTCTGGCCTTTCTTAAAGCCCAAATCCCTCATTTTATTGGCTTTTATTTGACACACTGCCTTCCATTTTTAAAAGTTATTTTAATGGCCAAGCACGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCGGATCACAAGGTCAGGAGATGGAGACCATCCTGGCTAACACGGTGAAACCCTGTATCTACTAAAAATACAAAAAAATTAGCTAGGCATGGTGGTGCGTGCCTGTAGTCCCAGCTACTAGGGTGGCTGAGGCAGGAGAATCACTTGAACCCGGGAGGCGGAGGTTGCAGTTAGCCGAGATCGCGCCACTACACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAATCTAGCAGATGTCCTTCTTCTGAGACTTATCCCATGAGCGTTTGGCCTAACAATGAAGGATTCTTCCCTCTCAAAAGAGAGAGTTCTCTAGTTAATCAAATATTTAACACCAAATTTTCTGAATCAAAACAATTAGCTGGTAACTTAGAGCTGATTTTCTCATGGTTATTAGGCTGTTTGAAAACCTGTGAATGATCTGGATAACTTATTTGAATAATTATCCTTAAAGCAATTACTCTGCTATGAAGCACTGATAGTGTAGATATTTATCTTAATGTGAGATGAAAGTGTTGTTATAACTTCAAAAAGCTTAAGGAATCTTGGCTCTAATCCTCCATAGCAACAGTCGGTTTTGCTCTAAAACTGGAAAAACAGTTTTGCTAGGGAGGCAGGATATCGGAGTGGAAAAGTCACTGAAGAGACATAGATTCTGTTCCTCTTTCTTGTAACAGGAAGCAACTCCACCTCAGAAACTTTAAGGTGCTGGCCAGGATCAGATAACTAGTTAGTGGCAGCTTCCATCTTTTTAGTAAAAGCCAATTTGTCTGACGCTTAATTTTTATTCCAAGTGTTATCTTTAGGTCTTTTAGGAACTAGTGTCATTAATTACAGTGTTCTGGAGGAAATATCAAAAAGCAGCTAACAGAGTAGCTATCTATAATATCCCCATTAAAGTCTGAGAATGTTATGCAATTGAATATGAAATTGCGCCATCCAGTGGCAGAATTATTGAACACTGAACAGACCCAACTTAAAGTCTGGAAATTAAATCCTCTCAAGGCTAGGTCCAGTGAATTACCCTCTAAGTACAATAACCTAATGTATAGTACATCAGGAAATTGTTTTCTTGTATTTTTTTCAAAACACCATATTTTGATCTACTATTGTCAAGGTATGTTTTATAATTTTTTTTTAAAAGATTGTTATCTTCTACATTTTTTCCTAG
Seq C2 exon
GTCCTGGAATCTCAAAATTTGTTCAGAAAGTAAATGAAATAGGCATTTACCTGACTGATTGCATGGAAAGAGCTAGGGAAGTGATTCCAAGGTCCCAGCACCAAGAGACACCCGTTTACCTGGGAGCCACGGCAGGCATGCGGTTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138185:ENST00000490659:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.063
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(16.5=100)
A:
NA
C2:
PF0115012=GDA1_CD39=PU(67.4=96.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development