RnoINT0055224 @ rn6
Intron Retention
Gene
ENSRNOG00000009239 | Entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:RGD Symbol;Acc:1561793]
Coordinates
chr3:2290523-2291596:+
Coord C1 exon
chr3:2290523-2290640
Coord A exon
chr3:2290641-2291445
Coord C2 exon
chr3:2291446-2291596
Length
805 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
CTTAGGGCGCTGTGTTTCAGGAC
3' ss Score
5.97
Exon sequences
Seq C1 exon
TTTGGGATCCTGTTTGACGCCGGCTCCTCCCACACATCACTGTTTGTGTACCAGTGGCCAGCAAACAAGGAGAAGGACACAGGAGTGGTCAGCCAGGCCCTGGCTTGCCAGGTAGAAG
Seq A exon
GTCAGTGGACAGCCCTAGGGCAGGTCACTGCTGCCTGGCTTGGACTTCCAGGTGATAGATAACAGGAAGCCCAGTGTGAGACACCACTGGTGGCAGGTGGAAGCTACATTTCTAGTCCTCAGGAAAGCACATCAACCTGAAAGAAAAGGGCTTAGAGTGTTGAAGTGGGACACAGGGTCACACAGTTGGTCTGGCTCTGAGGAGAATCCACGCACGGATCTCAGACCCTACACCTCTTCCAGGGCCTGGGGCTAACGTTCCCTCATCTGGTCCCAGGTCTGCCCTCCAACCAGGTCCCTCTCTGGCATCTTGGAGCTTCCCACTAGGTCTACACAGCACTGAGGACAGGGGCTGCCAGGTGCTAAGCCCTGGGTGTACTTCCTGGGGTTCCTCTCAATTCTAGAGACTAAAACCTGAGCCCAAAGGTGGCAGAATCACACTCTTCAGAAGCCCCAAAGTGGGAGGAACTCAGGTTTTCCCATCTTTCCCTGTAAGAATTGTCGTCACTGGACTTGGAGTCCACTATGCAACCAAACTAGCTTCATCTATTGGTCTCCTTCGTTGTTTCAGTCACAGTCTTGCTGTGTATCCCAGGTTAACCTTAAATCCTCACTCCCCTGCCTCAACCTCCCACGTACTGTGGTTATAGACAAGCACCATCGTGCCCCATTCAAAAACCCTTAATTTAACTTGGGAACATTCTTCTTCCAACAAAGGTCCCATTCACAGGCTTCGACATCTCTGGTGGCTGCCATCCATCTGGACCTTTAGATTTAGAGCCTTTCCTTAGGGCGCTGTGTTTCAG
Seq C2 exon
GACCGGGAATCTCTTCCTACACCTCTGACCCGACACAGGCTGGGGAGAGCCTGAAGAGCTGCCTGCAGGAGGCGCTGGCACTGATCCCACAGACCCAGCATCCAGTGACGCCCACATTCCTGGGGGCCACAGCAGGAATGAGGCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009239:ENSRNOT00000012289:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(9.1=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGGATCCTGTTTGACGCC
R:
CAGCCTCATTCCTGCTGTGG
Band lengths:
264-1069
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]