GgaINT0124852 @ galGal3
Intron Retention
Gene
ENSGALG00000021274 | F1NJE7_CHICK
Description
NA
Coordinates
chr17:1330017-1331023:-
Coord C1 exon
chr17:1330906-1331023
Coord A exon
chr17:1330168-1330905
Coord C2 exon
chr17:1330017-1330167
Length
738 bp
Sequences
Splice sites
5' ss Seq
AGGGTCAGT
5' ss Score
5.85
3' ss Seq
CAAGCTTGACTCTCTTCCAGGGC
3' ss Score
6.89
Exon sequences
Seq C1 exon
TACGGGATGGTGTTTGATGCAGGCTCATCCCACACCTCTCTGTTTGTCTACGAGTGGGACTCGGACAAGCAGAACAACACCGGTGTGGTCAGCCAGACCTTGTCCTGTGATGTCCAGG
Seq A exon
GTCAGTATTCCCTGGGCAAGGGCTTGTGTGGTGGGTGGGTTGACCTGGCCTCCCTCTTCTTGGCCTGCCCATGCCACACAAGACCAAACACTCGGTGGGACTGAAGTGTCTTGGTCTTCCCCTGGATTTCACCCTCCACTTTGTTCTGCACAAGTTGTTCTCAGGGGGGAAGGTCTCATCCTGACACGGCGTATCTGTGGGGTTGTGGTGGGGACCCTCAGATAGCTCTTGCCCTTTCTGGTTGGTGCTTTGGCTCACTCAGTGCTTGCAGGTGGCAGGTCCCACTGCTTCTGCTTTCAACTTCTTGGGCTCTGCTTTGCCTCTGTGCTCTCTGTGCTCCTGTTCTGGCATCCAAAGGCTTTGCAAGTGTGGGCAAAGCCTCACCTTCATGGTATGGCACTGACACTACACTGGAACTTCTTGATGGGGAGGAAAGGGACTAGATAGAATAGCCTGCCTCTTGCTGGGTGGATGCAGAGAGCCCAGATCTGTCCAATCCCAGTGATGAGACATGAACAAGTGTTACACAACTCCTCAGGGCTCGGCTAGGAGCACACGTACAGTGGGCCAGCCTGAAGAGGCAGTGATCATAACAGGTCTGTGAGCCAGGTCCTGCAGGACAGGGCAACCCCAATAAAGAACCCATTCTTGCTAAGAGGTGACAGATCTCACTGCCCTGTGTTCTCCCACTCCTTCATCTGTTCCTCATCAGCCTGTCCAAGCTTGACTCTCTTCCAG
Seq C2 exon
GGCCAGGCATATCAAGCTATGCCGATGATCCCCCAAAAGCTGGTGATTCCCTAAGAGAGTGCCTGGATGAAGCCCTGAAGGTCATTCCTGCTGCAAAGCAGAGGGATGTCTCAGCTTACTTCGGAGCGACAGCAGGCATGAGGCTACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021274:ENSGALT00000014517:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(9.1=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGGATGGTGTTTGATGCAG
R:
CTCAGTAGCCTCATGCCTGCT
Band lengths:
268-1006
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]