RnoINT0055164 @ rn6
Intron Retention
Gene
ENSRNOG00000013102 | Entpd2
Description
ectonucleoside triphosphate diphosphohydrolase 2 [Source:RGD Symbol;Acc:69266]
Coordinates
chr3:2619317-2620057:+
Coord C1 exon
chr3:2619317-2619434
Coord A exon
chr3:2619435-2619906
Coord C2 exon
chr3:2619907-2620057
Length
472 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCAAGCCTTGTTCCTTTTAGGTG
3' ss Score
8.47
Exon sequences
Seq C1 exon
TACGGCATTGTCCTGGATGCGGGCTCTTCACACACATCCATGTTTGTCTACAAGTGGCCAGCGGACAAGGAGAATGACACAGGCATCGTGGGCCAGCACAGCTCTTGTGATGTTCAAG
Seq A exon
GTGAGCATGGTTTGTCTTGGGTTCCTGTTAAGTTGCAGGCCCAGACAGTTATTCTCCTCTGCTTGCTGCTGGGTGGGGCTCACTCGAGGCAGGAGTTCAAAAGGAGAGGCTGGGTTCTCTGGACCTGGGAATGACTGTGGGCACTTTATGTTCTGGAACTGAAGCCCCAGGGAGCAGGTGGGAAGCCTTGGGGTTTAATGACCCAAGACAGACAGAGCTCTACACTATAGATGTGGCAGGCGGGCCTCCGAGGGTGGATCCCAGCAGGTTCTATGGAGGCTGGGCTAGGCTGACAATGCCCAGATCTTTCTCCTGGCACCTGTGCCCACAGCTACTAGGCAGGCGGCAGCATCAGAGACTCTGGGTGGCACCTGGACCCTTTGTCTCCAATTTGGGTATCCGTGGGATTAAGCGGGGAAGGCGTGTCCATATGCTGTGCTGGAAACCGTCCACCAAGCCTTGTTCCTTTTAG
Seq C2 exon
GTGGTGGCATCTCCAGCTATGCAAATGACCCCTCTAAGGCAGGCCAGAGTCTGGTCCGATGCCTTGAGCAGGCCCTTCGGGATGTACCCAGAGACAGACATGCTAGCACACCACTCTACCTGGGAGCTACAGCAGGCATGCGCCTGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013102:ENSRNOT00000017829:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(9.1=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGGCATTGTCCTGGATGC
R:
CCTGCTGTAGCTCCCAGGTAG
Band lengths:
254-726
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]