HsaINT0056488 @ hg19
Intron Retention
Gene
ENSG00000054179 | ENTPD2
Description
ectonucleoside triphosphate diphosphohydrolase 2 [Source:HGNC Symbol;Acc:3364]
Coordinates
chr9:139945962-139946800:-
Coord C1 exon
chr9:139946683-139946800
Coord A exon
chr9:139946113-139946682
Coord C2 exon
chr9:139945962-139946112
Length
570 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ATCTCTCTGCCTCCCTCTAGGTG
3' ss Score
13.5
Exon sequences
Seq C1 exon
TATGGCATCGTCCTGGACGCTGGTTCTTCACACACGTCCATGTTTATCTACAAGTGGCCGGCAGACAAGGAGAACGACACAGGCATTGTGGGCCAGCACAGCTCCTGTGATGTTCCAG
Seq A exon
GTGAGGCCCAGCCCAGCCCAGCCAGGACGCCCACTCACTGCAGGGTCTCTGGGACCCTCTCCAGCCTTAGCCAGTGCAGGTCCTTCTGCTTAGTGTTGGGTGGGGCTCACTCCAGGCAGAAGCCCTGGAAAGAGAGAGGCTGGTGCCCCTGCGCCTGAGTGGGGCCAGGAGTCGTTTGCATTCTAGAAAGGAAGCCTAGGCAGCAGGTGGGGAGGTTTGAGCCTCGCCGGGCCCAGTATTGGCTTCTGTGCCCCAGATGGAGCAGGAGGAGGTCTGGGGGCCTGGCGGACACACCCAGGCAGGCCTCAGGAGGCCAACCTGGGTTGACCATGCCCAGGGCTTTGTCCTAGCACCTGCACCCACACCCTCTCAGCAGGCAGCAGCCTTGGTCTCCGGGTGGCACCTGGGCCCCTTTGTCTCCAACCTGGGCGTTTCTGGGGGCTTAAGCAGGGAAGGTGTGCCACCTGGTCTGGGAGCCCACGGCCCCCACCCCCACCCTCACTCTCCTGGCCTACGGCCCACCTAGGGGCTGCCCGTGAGGCATAGGCTCATCTCTCTGCCTCCCTCTAG
Seq C2 exon
GTGGGGGCATCTCCAGCTATGCAGACAACCCTTCTGGGGCCAGCCAGAGTCTTGTTGGATGCCTCGAACAGGCGCTTCAGGATGTGCCCAAAGAGAGACACGCGGGCACACCCCTCTACCTGGGAGCCACAGCGGGTATGCGCCTGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000054179-ENTPD2:NM_001246:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(11.0=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(14.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACGCTGGTTCTTCACAC
R:
TTGAGCAGGCGCATACCC
Band lengths:
257-827
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)