GgaINT0125658 @ galGal4
Intron Retention
Gene
ENSGALG00000009058 | ENTPD2
Description
ectonucleoside triphosphate diphosphohydrolase 2 precursor [Source:RefSeq peptide;Acc:NP_990285]
Coordinates
chr17:405749-406387:+
Coord C1 exon
chr17:405749-405866
Coord A exon
chr17:405867-406236
Coord C2 exon
chr17:406237-406387
Length
370 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
TGCAGTTTCCCTCTCCGCAGGTC
3' ss Score
10.99
Exon sequences
Seq C1 exon
TACGGCATCGTGCTGGACGCCGGATCCTCCCACACGGCCGTGTTCATCTACAAGTGGCCCGCGGACAAGGAGAACGACACTGGGGTGGTCAGCGAGCACAGCATGTGCGACGTGGAGG
Seq A exon
GTAAGGGCTGTCCCGGCTGCGGCGGTGGCAGTCCCTCGCTGGCTCTGCCGCCTCCCCGCGCTCCCAGCAGGAGCAAGGAGGTGCTGGGGGGGTCCCGCTCTGCTCCCTAAACCTCCCCCGTTCCCAGGGAAGATGCGCTCAGAACACGCCGGCAGTTTCTCTCTCCAAACCCAGGGTGGTTCACTGCCCAGCCCAGCGGGGAGCGAGCTGTGGGCAGGGAGCTGCAGCTGAGCCCCGTTCTGCTGTCGCTGTGTCCATCCACAGCAACCCTCGGCCTTTCTGAGCACCCGGGGGGGGGGGCAAAGCCGCTCCCCGAGCATCCTCCCCCCACCCCCATGGCTGCAGGGCGATGCAGTTTCCCTCTCCGCAG
Seq C2 exon
GTCCTGGCATCTCCAGCTACAGCTCCAAACCTCCGGCTGCTGGGAAGAGCTTAGAGCACTGCCTGAGCCAGGCTATGAGAGATGTGCCCAAGGAGAAGCACGCAGACACTCCGCTCTACCTGGGTGCCACAGCTGGCATGCGCCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009058:ENSGALT00000014744:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(9.0=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(11.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACGCCGGATCCTCC
R:
CTGTGGCACCCAGGTAGAGC
Band lengths:
238-608
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]