GgaINT0125658 @ galGal3
Intron Retention
Gene
ENSGALG00000009058 | F1NGR8_CHICK
Description
NA
Coordinates
chr17:789044-789682:+
Coord C1 exon
chr17:789044-789161
Coord A exon
chr17:789162-789531
Coord C2 exon
chr17:789532-789682
Length
370 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
TGCAGTTTCCCTCTCCGCAGGTC
3' ss Score
10.99
Exon sequences
Seq C1 exon
TATCGCATCGTCTTAGTCGCCGGATCCTCCCACACGTCCGTGTTCATCTACAAGTGGAGAAGGGACAAGGAGAAGGACATTGGGGTGGTCAGCGAACACAGCATTTGTGACGTGGAGG
Seq A exon
GTAAGGGCTGTCCCGGCTGCGGCGGTGGCAGTCCCTCCATGGCTCTGCCGCCTCACCACGCTCCAAGCAGGAGCAAGGAGGTGCTGGGGGGGTCCCGTTCTGCTCCCTAAACCTCCCCGGTTCCCAGGGAAGATGCGCTCAGAACACGCCGGCAGTTTCTCTCTCCAAACCCAGGGTGGTTCACTGCCCAGCCCAGCGGGGAGCGAGCTGTGGGCAGGGAGCTGCAGCTGAGCCCCGTTCTGCTGTCGCTGTGTCCATCCACAGCAACCCTCGGCCTTTCTGAGCACCCGGGGGGGGGGGCAAAGCCGCTCCCCGAGCATCCTCCCCCCACCCCCATGGCTGCAGGGCGATGCAGTTTCCCTCTCCGCAG
Seq C2 exon
GTCCTGGCATCTCCAGCTACAGCTCCAAACCTCCGGCTGCTGGGAAGAGCTTAGAGCACTGCCTGAGCCAGGCTATGAGAGATGTGCCCAAGGAGAAGCACGCAGACACTCCGCTCTACCTGGGTGCCACAGCTGGCATGCGCCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009058:ENSGALT00000014744:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(9.0=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(11.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGTCTTAGTCGCCGGATC
R:
GCTGTGGCACCCAGGTAGAG
Band lengths:
246-616
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]